Hb_000123_160

Information

Type -
Description -
Location Contig123: 120375-121490
Sequence    

Annotation

kegg
ID rcu:RCOM_0465830
description 30S ribosomal protein S8, putative
nr
ID XP_012081549.1
description PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
swissprot
ID P42798
description 40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2
trembl
ID I3NML3
description 40S ribosomal protein S15C OS=Hevea brasiliensis GN=RPS15C PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s15a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06962: 120374-121378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_160 0.0 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
2 Hb_062135_020 0.0948631417 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
3 Hb_000976_250 0.0993103058 - - -
4 Hb_146225_010 0.1014268548 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
5 Hb_000318_490 0.1036479556 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
6 Hb_000236_150 0.1141538273 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_000001_070 0.118699285 - - -
8 Hb_005914_200 0.1191297191 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
9 Hb_001052_030 0.1228379361 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
10 Hb_000239_030 0.1230060759 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
11 Hb_001386_050 0.1253259505 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
12 Hb_002344_070 0.1267526638 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
13 Hb_000300_390 0.1270892148 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
14 Hb_000270_620 0.1280040845 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
15 Hb_004735_050 0.1282763231 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_030565_040 0.1285436749 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_008748_020 0.1287641892 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
18 Hb_002518_290 0.1316587862 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
19 Hb_000431_160 0.1316860511 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
20 Hb_006588_080 0.1349081854 - - hypothetical protein JCGZ_25746 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_160 Hb_000123_160 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_146225_010 Hb_146225_010 Hb_000123_160--Hb_146225_010 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_002518_290 Hb_002518_290 Hb_062135_020--Hb_002518_290 Hb_005000_180 Hb_005000_180 Hb_062135_020--Hb_005000_180 Hb_062135_020--Hb_000976_250 Hb_062135_020--Hb_000236_150 Hb_000302_290 Hb_000302_290 Hb_062135_020--Hb_000302_290 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_000976_250--Hb_002518_290 Hb_012539_020 Hb_012539_020 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_005841_050 Hb_005841_050 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_001369_400 Hb_001369_400 Hb_000318_490--Hb_001369_400 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_000001_070--Hb_000236_150 Hb_000001_070--Hb_000905_180 Hb_000001_070--Hb_000239_030 Hb_002374_390 Hb_002374_390 Hb_000001_070--Hb_002374_390 Hb_000001_070--Hb_005914_200 Hb_000001_070--Hb_062135_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.163 24.5505 39.4511 85.7129 41.5755 135.272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
277.165 806.493 409.534 107.045 36.5457

CAGE analysis