Hb_000302_290

Information

Type -
Description -
Location Contig302: 195173-197861
Sequence    

Annotation

kegg
ID brp:103834856
description 40S ribosomal protein S10-1-like
nr
ID KHG07170.1
description 40S ribosomal S10-3 -like protein [Gossypium arboreum]
swissprot
ID Q9SW09
description 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1
trembl
ID A0A0B0N2C6
description 40S ribosomal S10-3-like protein OS=Gossypium arboreum GN=F383_34396 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31809: 196327-196462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_290 0.0 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
2 Hb_001240_020 0.0942615624 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
3 Hb_005000_180 0.0947197298 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
4 Hb_062135_020 0.1031580628 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
5 Hb_000061_130 0.1134834507 - - rotamase, putative [Ricinus communis]
6 Hb_147752_010 0.1218600998 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
7 Hb_002518_290 0.1232586885 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
8 Hb_000110_170 0.124220037 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001307_210 0.1280327641 - - Os02g0814700 [Oryza sativa Japonica Group]
10 Hb_006006_050 0.1289083257 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
11 Hb_120823_010 0.129014647 - - -
12 Hb_001085_270 0.1296937058 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_000878_020 0.1299305421 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
14 Hb_000707_020 0.131769521 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
15 Hb_003185_050 0.1342787825 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
16 Hb_003086_060 0.1345177256 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_003326_020 0.134634001 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
18 Hb_001369_170 0.1366021248 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
19 Hb_001172_100 0.1376574816 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
20 Hb_152910_020 0.1381905205 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000302_290 Hb_000302_290 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_005000_180 Hb_005000_180 Hb_000302_290--Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_000302_290--Hb_062135_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_147752_010 Hb_147752_010 Hb_000302_290--Hb_147752_010 Hb_002518_290 Hb_002518_290 Hb_000302_290--Hb_002518_290 Hb_001240_020--Hb_147752_010 Hb_001240_020--Hb_000061_130 Hb_000445_490 Hb_000445_490 Hb_001240_020--Hb_000445_490 Hb_000928_130 Hb_000928_130 Hb_001240_020--Hb_000928_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_005000_180--Hb_062135_020 Hb_000163_210 Hb_000163_210 Hb_005000_180--Hb_000163_210 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_062135_020--Hb_002518_290 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_000976_250 Hb_000976_250 Hb_062135_020--Hb_000976_250 Hb_000236_150 Hb_000236_150 Hb_062135_020--Hb_000236_150 Hb_027380_180 Hb_027380_180 Hb_000061_130--Hb_027380_180 Hb_000061_130--Hb_001085_270 Hb_000193_120 Hb_000193_120 Hb_000061_130--Hb_000193_120 Hb_000567_410 Hb_000567_410 Hb_000061_130--Hb_000567_410 Hb_002909_130 Hb_002909_130 Hb_000061_130--Hb_002909_130 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_147752_010--Hb_000445_490 Hb_002518_290--Hb_000976_250 Hb_012539_020 Hb_012539_020 Hb_002518_290--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43778 6.05481 3.6776 8.4541 3.90589 3.96232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6115 61.9791 28.456 17.8592 11.5043

CAGE analysis