Hb_000111_100

Information

Type -
Description -
Location Contig111: 133458-138573
Sequence    

Annotation

kegg
ID rcu:RCOM_1452380
description NADPH:quinone oxidoreductase, putative (EC:1.6.5.2)
nr
ID XP_010514499.1
description PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
swissprot
ID Q9LK88
description NADPH:quinone oxidoreductase OS=Arabidopsis thaliana GN=NQR PE=1 SV=1
trembl
ID B9RG95
description NADPH:quinone oxidoreductase, putative OS=Ricinus communis GN=RCOM_1452380 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nadph:quinone oxidoreductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03377: 136526-138556 , PASA_asmbl_03379: 137838-138031
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_100 0.0 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
2 Hb_000645_140 0.0985432894 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
3 Hb_147752_010 0.10356037 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
4 Hb_000878_020 0.1035935132 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
5 Hb_027472_160 0.1040495102 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
6 Hb_000062_390 0.1121366363 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
7 Hb_000093_110 0.1139353202 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
8 Hb_120823_010 0.1146412458 - - -
9 Hb_000069_700 0.1164734279 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
10 Hb_000567_410 0.1204969382 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_002081_030 0.1212746292 - - unnamed protein product [Coffea canephora]
12 Hb_000110_170 0.122003728 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002802_020 0.1248456465 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
14 Hb_000445_490 0.1249235275 - - -
15 Hb_002391_220 0.1262698344 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
16 Hb_000577_090 0.1265819866 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
17 Hb_002006_130 0.1279368724 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
18 Hb_006588_080 0.1289258333 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
19 Hb_004846_090 0.1289720754 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
20 Hb_008948_050 0.1299379478 - - hypothetical protein JCGZ_13339 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_100 Hb_000111_100 Hb_000645_140 Hb_000645_140 Hb_000111_100--Hb_000645_140 Hb_147752_010 Hb_147752_010 Hb_000111_100--Hb_147752_010 Hb_000878_020 Hb_000878_020 Hb_000111_100--Hb_000878_020 Hb_027472_160 Hb_027472_160 Hb_000111_100--Hb_027472_160 Hb_000062_390 Hb_000062_390 Hb_000111_100--Hb_000062_390 Hb_000093_110 Hb_000093_110 Hb_000111_100--Hb_000093_110 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000645_140--Hb_000093_110 Hb_002588_010 Hb_002588_010 Hb_000645_140--Hb_002588_010 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_019516_100 Hb_019516_100 Hb_000645_140--Hb_019516_100 Hb_001240_020 Hb_001240_020 Hb_147752_010--Hb_001240_020 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_006588_080 Hb_006588_080 Hb_000878_020--Hb_006588_080 Hb_000878_020--Hb_000110_170 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_002811_090 Hb_002811_090 Hb_027472_160--Hb_002811_090 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_027472_160--Hb_000645_140 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_007120_090 Hb_007120_090 Hb_027472_160--Hb_007120_090 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_000062_390--Hb_002588_010 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_000093_110--Hb_002588_010 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95579 5.13478 14.3695 9.68249 6.64693 6.37615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.911 73.8872 22.3286 7.45341 13.7152

CAGE analysis