Hb_000928_130

Information

Type -
Description -
Location Contig928: 123186-126945
Sequence    

Annotation

kegg
ID rcu:RCOM_1517150
description transcription regulator, putative
nr
ID XP_012070286.1
description PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID Q9LF68
description Protein BOLA4, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=BOLA4 PE=1 SV=1
trembl
ID A0A067KTT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02597 PE=3 SV=1
Gene Ontology
ID GO:0009507
description protein chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62761: 123220-126915
cDNA
(Sanger)
(ID:Location)		 048_G03.ab1: 123222-126781

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000928_130 0.0 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_002026_120 0.0634219105 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
3 Hb_000096_150 0.0784777681 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
4 Hb_000318_160 0.0821287866 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
5 Hb_000445_490 0.0885676192 - - -
6 Hb_023344_050 0.0974010147 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
7 Hb_001240_020 0.1001355698 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
8 Hb_000125_210 0.1033308729 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
9 Hb_147752_010 0.1094946787 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
10 Hb_003349_080 0.1107053867 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
11 Hb_003880_030 0.1107911937 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_000224_140 0.1120331203 - - ribonuclease z, chloroplast, putative [Ricinus communis]
13 Hb_000056_250 0.1160741776 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
14 Hb_003050_280 0.1170115223 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_001314_040 0.1219990223 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
16 Hb_000056_070 0.1227035078 - - -
17 Hb_068056_030 0.124276697 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
18 Hb_000673_020 0.1255083001 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
19 Hb_013405_140 0.1255336715 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
20 Hb_000384_120 0.1259739724 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000928_130 Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000928_130--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_001240_020 Hb_001240_020 Hb_000928_130--Hb_001240_020 Hb_002026_120--Hb_000096_150 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000125_210 Hb_000125_210 Hb_000096_150--Hb_000125_210 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000445_490 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000445_490--Hb_000224_140 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_023344_050--Hb_001240_020 Hb_023344_050--Hb_000056_250 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5445 7.25129 22.8183 22.4041 4.44587 11.5418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.6504 92.1766 65.2423 23.2762 36.9011

CAGE analysis