Hb_147752_010

Information

Type -
Description -
Location Contig147752: 900-1064
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07520g
description POPTRDRAFT_1105522; hypothetical protein
nr
ID XP_011004201.1
description PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
swissprot
ID Q9LXG1
description 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1
trembl
ID A9PJU4
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147752_010 0.0 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
2 Hb_001240_020 0.0929636958 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
3 Hb_000111_100 0.10356037 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
4 Hb_000928_130 0.1094946787 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000110_170 0.1123534232 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_007441_260 0.1137897599 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
7 Hb_000445_490 0.117282333 - - -
8 Hb_002026_120 0.1181955964 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
9 Hb_003020_330 0.1187298901 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
10 Hb_120823_010 0.1214500798 - - -
11 Hb_000302_290 0.1218600998 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
12 Hb_023344_050 0.1240817597 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
13 Hb_000997_190 0.1319981481 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
14 Hb_007313_080 0.132237055 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
15 Hb_000069_700 0.132678512 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
16 Hb_004567_020 0.133217316 - - Small ubiquitin-related modifier 2 [Morus notabilis]
17 Hb_000061_130 0.1344902787 - - rotamase, putative [Ricinus communis]
18 Hb_002042_080 0.1357936833 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
19 Hb_000878_020 0.1370425164 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
20 Hb_003020_150 0.1379771572 - - tropinone reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_147752_010 Hb_147752_010 Hb_001240_020 Hb_001240_020 Hb_147752_010--Hb_001240_020 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_000928_130 Hb_000928_130 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_000445_490 Hb_000445_490 Hb_147752_010--Hb_000445_490 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001240_020--Hb_000445_490 Hb_001240_020--Hb_000928_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_000645_140 Hb_000645_140 Hb_000111_100--Hb_000645_140 Hb_000878_020 Hb_000878_020 Hb_000111_100--Hb_000878_020 Hb_027472_160 Hb_027472_160 Hb_000111_100--Hb_027472_160 Hb_000062_390 Hb_000062_390 Hb_000111_100--Hb_000062_390 Hb_000093_110 Hb_000093_110 Hb_000111_100--Hb_000093_110 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000928_130--Hb_000318_160 Hb_000928_130--Hb_000445_490 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_005391_030 Hb_005391_030 Hb_007441_260--Hb_005391_030 Hb_000087_130 Hb_000087_130 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000445_490--Hb_000318_160 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.7268 106.71 263.826 222.923 45.1734 78.9246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
641.799 1395.86 543.052 277.678 287.925

CAGE analysis