Hb_000445_490

Information

Type -
Description -
Location Contig445: 609240-612949
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42930: 609292-612853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_490 0.0 - - -
2 Hb_002391_220 0.0845738642 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
3 Hb_000318_160 0.0851320367 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
4 Hb_000928_130 0.0885676192 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001240_020 0.098619882 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
6 Hb_000975_230 0.098639649 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
7 Hb_000224_140 0.1027288399 - - ribonuclease z, chloroplast, putative [Ricinus communis]
8 Hb_001136_060 0.1048189256 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
9 Hb_001076_020 0.1055212734 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
10 Hb_003349_080 0.1060563918 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
11 Hb_000096_150 0.1072671994 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000056_070 0.1081418547 - - -
13 Hb_120823_010 0.1087731608 - - -
14 Hb_003050_280 0.1104892738 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
15 Hb_000042_200 0.111285631 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
16 Hb_072922_020 0.1115200035 - - SNARE-like superfamily protein [Theobroma cacao]
17 Hb_005463_140 0.1123023038 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
18 Hb_001155_040 0.1126228067 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_000163_210 0.1127412287 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
20 Hb_000030_200 0.1139709876 - - PREDICTED: early nodulin-93-like [Populus euphratica]

Gene co-expression network

sample Hb_000445_490 Hb_000445_490 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_001304_140 Hb_001304_140 Hb_002391_220--Hb_001304_140 Hb_000270_720 Hb_000270_720 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_000928_130--Hb_001240_020 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_000224_140--Hb_003349_080 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.98829 3.09763 16.4137 23.9227 7.26746 11.345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.1632 90.2089 40.9404 18.8904 28.999

CAGE analysis