Hb_000260_790

Information

Type -
Description -
Location Contig260: 587706-589632
Sequence    

Annotation

kegg
ID tcc:TCM_041145
description NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1
nr
ID XP_007015542.1
description NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GUN5
description NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 OS=Theobroma cacao GN=TCM_041145 PE=4 SV=1
Gene Ontology
ID GO:0005747
description probable nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27072: 587730-593195
cDNA
(Sanger)
(ID:Location)		 002_E15.ab1: 587735-593099

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_790 0.0 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
2 Hb_077399_010 0.0767771073 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
3 Hb_000049_050 0.0894360011 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
4 Hb_002631_260 0.0970176506 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
5 Hb_001195_490 0.1153037256 - - hypothetical protein glysoja_018593 [Glycine soja]
6 Hb_000975_230 0.1223214536 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
7 Hb_138585_040 0.1308865679 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
8 Hb_005045_070 0.1364069941 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
9 Hb_002324_010 0.1368354036 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
10 Hb_000016_170 0.1387911106 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005496_090 0.1469446601 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
12 Hb_005167_030 0.1482854296 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
13 Hb_001172_100 0.1498723684 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
14 Hb_008206_100 0.1540450992 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
15 Hb_003880_040 0.1548352163 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
16 Hb_002154_110 0.1549660485 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
17 Hb_001935_150 0.1557333124 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
18 Hb_000292_060 0.1558904588 - - transporter, putative [Ricinus communis]
19 Hb_000463_130 0.1624064172 - - unnamed protein product [Coffea canephora]
20 Hb_145880_020 0.1630571709 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_790 Hb_000260_790 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_000049_050 Hb_000049_050 Hb_000260_790--Hb_000049_050 Hb_002631_260 Hb_002631_260 Hb_000260_790--Hb_002631_260 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000975_230 Hb_000975_230 Hb_000260_790--Hb_000975_230 Hb_138585_040 Hb_138585_040 Hb_000260_790--Hb_138585_040 Hb_002324_010 Hb_002324_010 Hb_077399_010--Hb_002324_010 Hb_077399_010--Hb_000049_050 Hb_077399_010--Hb_002631_260 Hb_005496_090 Hb_005496_090 Hb_077399_010--Hb_005496_090 Hb_077399_010--Hb_138585_040 Hb_000049_050--Hb_138585_040 Hb_000049_050--Hb_002631_260 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_002631_260--Hb_138585_040 Hb_002631_260--Hb_002324_010 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_001935_150 Hb_001935_150 Hb_001195_490--Hb_001935_150 Hb_001195_490--Hb_000049_050 Hb_001195_490--Hb_000975_230 Hb_001195_490--Hb_002631_260 Hb_001195_490--Hb_077399_010 Hb_000445_490 Hb_000445_490 Hb_000975_230--Hb_000445_490 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_138585_040--Hb_001172_100 Hb_138585_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_138585_040--Hb_000384_120 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.269 10.0965 24.2177 323.462 24.7692 64.4774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
219.287 383.655 192.643 90.3437 106.273

CAGE analysis