Hb_003777_040

Information

Type -
Description -
Location Contig3777: 35643-38179
Sequence    

Annotation

kegg
ID vvi:100253870
description U6 snRNA-associated Sm-like protein LSm3
nr
ID XP_012066020.1
description PREDICTED: sm-like protein LSM3A [Jatropha curcas]
swissprot
ID Q9C6K5
description Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1
trembl
ID A0A067L3J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25183 PE=4 SV=1
Gene Ontology
ID GO:0019013
description u6 snrna-associated sm-like protein lsm3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38428: 35663-38244
cDNA
(Sanger)
(ID:Location)		 017_N10.ab1: 35663-38236 , 039_N09.ab1: 35663-38235

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003777_040 0.0 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
2 Hb_000975_230 0.1030805518 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
3 Hb_000445_490 0.1271276484 - - -
4 Hb_011377_020 0.1370950391 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
5 Hb_103118_020 0.1390936806 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
6 Hb_002809_150 0.1393050391 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
7 Hb_001307_210 0.1419912281 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_001240_020 0.1425059748 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
9 Hb_000707_020 0.1457227935 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
10 Hb_004162_180 0.1470726093 - - zinc finger protein, putative [Ricinus communis]
11 Hb_023344_050 0.1486498911 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
12 Hb_002518_290 0.150091696 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
13 Hb_003849_270 0.1562012102 - - -
14 Hb_000599_280 0.1564041316 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
15 Hb_000834_030 0.1577706304 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
16 Hb_000049_050 0.1579009623 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
17 Hb_003020_330 0.1603642574 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
18 Hb_000976_250 0.1610508284 - - -
19 Hb_001172_100 0.1615918038 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
20 Hb_002391_220 0.162220633 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]

Gene co-expression network

sample Hb_003777_040 Hb_003777_040 Hb_000975_230 Hb_000975_230 Hb_003777_040--Hb_000975_230 Hb_000445_490 Hb_000445_490 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_002809_150 Hb_002809_150 Hb_003777_040--Hb_002809_150 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210 Hb_000975_230--Hb_000445_490 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_012395_130 Hb_012395_130 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_004007_180 Hb_004007_180 Hb_011377_020--Hb_004007_180 Hb_005914_200 Hb_005914_200 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_002518_290 Hb_002518_290 Hb_103118_020--Hb_002518_290 Hb_103118_020--Hb_001307_210 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_103118_020--Hb_011377_020 Hb_000429_090 Hb_000429_090 Hb_002809_150--Hb_000429_090 Hb_002809_150--Hb_000975_230 Hb_010402_050 Hb_010402_050 Hb_002809_150--Hb_010402_050 Hb_002809_150--Hb_002518_290 Hb_001493_120 Hb_001493_120 Hb_002809_150--Hb_001493_120 Hb_001449_090 Hb_001449_090 Hb_001307_210--Hb_001449_090 Hb_001307_210--Hb_011377_020 Hb_003020_330 Hb_003020_330 Hb_001307_210--Hb_003020_330 Hb_001307_210--Hb_006588_080 Hb_001307_210--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6537 6.62733 27.7684 112.759 11.7813 64.0296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
233.534 485.963 157.731 91.3029 160.647

CAGE analysis