Hb_004007_180

Information

Type -
Description -
Location Contig4007: 158340-160851
Sequence    

Annotation

kegg
ID rcu:RCOM_0579590
description hypothetical protein
nr
ID XP_012079394.1
description PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12526 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39874: 158405-160783 , PASA_asmbl_39875: 159299-159408 , PASA_asmbl_39876: 159413-159566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_180 0.0 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
2 Hb_000270_720 0.0685471731 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_002316_120 0.0741212846 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
4 Hb_000599_280 0.076266967 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
5 Hb_006588_080 0.0841338437 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
6 Hb_000789_110 0.0869024535 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
7 Hb_004735_050 0.0872582019 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
8 Hb_011377_020 0.0884984824 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
9 Hb_004754_070 0.0904075099 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
10 Hb_001780_050 0.0905082504 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
11 Hb_000300_390 0.0906882361 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_012395_130 0.0908338119 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_000915_120 0.0931797422 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
14 Hb_000203_020 0.0955449444 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
15 Hb_000172_420 0.0977642223 - - 60S ribosomal protein L30, putative [Ricinus communis]
16 Hb_000062_390 0.0978746219 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
17 Hb_003549_020 0.0980335561 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000367_210 0.0980871484 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
19 Hb_000805_130 0.1001342219 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000163_130 0.1022186907 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]

Gene co-expression network

sample Hb_004007_180 Hb_004007_180 Hb_000270_720 Hb_000270_720 Hb_004007_180--Hb_000270_720 Hb_002316_120 Hb_002316_120 Hb_004007_180--Hb_002316_120 Hb_000599_280 Hb_000599_280 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_000789_110 Hb_000789_110 Hb_004007_180--Hb_000789_110 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050 Hb_000270_720--Hb_000789_110 Hb_000270_720--Hb_002316_120 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_002316_120--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_002316_120--Hb_000300_390 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_006588_080--Hb_002316_120 Hb_006588_080--Hb_000172_420 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_000789_110--Hb_001377_380 Hb_004735_050--Hb_000635_080 Hb_004735_050--Hb_000878_020 Hb_004735_050--Hb_002316_120 Hb_008748_020 Hb_008748_020 Hb_004735_050--Hb_008748_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.651 3.30328 9.22203 22.7207 7.87704 21.0639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.7678 112.822 30.8718 11.5805 10.3286

CAGE analysis