Hb_000172_420

Information

Type -
Description -
Location Contig172: 472515-474628
Sequence    

Annotation

kegg
ID rcu:RCOM_0985630
description 60S ribosomal protein L30, putative
nr
ID XP_002528991.1
description 60S ribosomal protein L30, putative [Ricinus communis]
swissprot
ID O49884
description 60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1
trembl
ID B9SSM2
description 60S ribosomal protein L30, putative OS=Ricinus communis GN=RCOM_0985630 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16163: 472440-474594
cDNA
(Sanger)
(ID:Location)		 006_M19.ab1: 472442-474503 , 010_P24.ab1: 472442-474503 , 013_H11.ab1: 472443-474592 , 021_J10.ab1: 472442-474503 , 039_D06.ab1: 472442-474503 , 047_G09.ab1: 472443-474592

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_420 0.0 - - 60S ribosomal protein L30, putative [Ricinus communis]
2 Hb_002248_100 0.0676616075 - - hypothetical protein VITISV_027197 [Vitis vinifera]
3 Hb_006588_080 0.0796022993 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
4 Hb_000062_390 0.0832348437 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
5 Hb_000635_080 0.0847755449 - - 60S ribosomal protein L17A [Hevea brasiliensis]
6 Hb_000270_720 0.0862866593 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_008948_050 0.0868365628 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
8 Hb_019516_100 0.0879762687 - - 40S ribosomal protein S14, putative [Ricinus communis]
9 Hb_000805_130 0.0884139032 - - conserved hypothetical protein [Ricinus communis]
10 Hb_172221_010 0.0925300241 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
11 Hb_026398_010 0.0940840778 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
12 Hb_000963_030 0.094138095 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
13 Hb_009384_020 0.095286302 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
14 Hb_000159_070 0.0955391991 - - JHL03K20.4 [Jatropha curcas]
15 Hb_000789_110 0.0976868509 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
16 Hb_004007_180 0.0977642223 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
17 Hb_000599_280 0.0983618057 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
18 Hb_007575_070 0.0986515258 - - Histone H3.2 [Glycine soja]
19 Hb_002316_120 0.0989391592 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
20 Hb_004735_050 0.0990977095 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_420 Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_002248_100--Hb_000635_080 Hb_007943_140 Hb_007943_140 Hb_002248_100--Hb_007943_140 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_002588_010 Hb_002588_010 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_000635_080--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000270_720--Hb_000789_110 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_008948_050--Hb_019516_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.7967 18.2327 54.5973 53.7422 45.4281 69.4728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
273.413 498.973 110.943 72.8611 29.6684

CAGE analysis