Hb_004545_130

Information

Type -
Description -
Location Contig4545: 168072-169003
Sequence    

Annotation

kegg
ID pvu:PHAVU_006G095800g
description hypothetical protein
nr
ID NP_001235770.1
description uncharacterized protein LOC100305465 [Glycine max]
swissprot
ID O65759
description Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1
trembl
ID V7BM87
description Histone H2A OS=Phaseolus vulgaris GN=PHAVU_006G095800g PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43396: 167953-169002
cDNA
(Sanger)
(ID:Location)		 003_A04.ab1: 167968-168126 , 003_J02.ab1: 167953-169002 , 046_J05.ab1: 167969-169002

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_130 0.0 - - uncharacterized protein LOC100305465 [Glycine max]
2 Hb_000635_080 0.0786605297 - - 60S ribosomal protein L17A [Hevea brasiliensis]
3 Hb_001377_380 0.080884592 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
4 Hb_000617_110 0.0857217919 - - translationally controlled tumor protein [Hevea brasiliensis]
5 Hb_000431_160 0.0983965513 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
6 Hb_004735_050 0.1076330156 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
7 Hb_004209_030 0.1111812791 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
8 Hb_006588_080 0.1113619835 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
9 Hb_001434_070 0.1120112928 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
10 Hb_002316_120 0.1153268342 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
11 Hb_000780_210 0.1170416546 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
12 Hb_001386_050 0.117962472 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
13 Hb_000300_390 0.1194728507 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
14 Hb_000318_490 0.1197084496 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
15 Hb_007254_080 0.12245108 - - -
16 Hb_000789_110 0.1234325793 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
17 Hb_000819_070 0.1238531239 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
18 Hb_005000_180 0.124936263 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
19 Hb_000260_200 0.1258083126 - - -
20 Hb_002248_100 0.1284313413 - - hypothetical protein VITISV_027197 [Vitis vinifera]

Gene co-expression network

sample Hb_004545_130 Hb_004545_130 Hb_000635_080 Hb_000635_080 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_000617_110 Hb_000617_110 Hb_004545_130--Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_004545_130--Hb_000431_160 Hb_004735_050 Hb_004735_050 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_001377_380--Hb_000780_210 Hb_001377_380--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_001377_380--Hb_000789_110 Hb_000300_390 Hb_000300_390 Hb_001377_380--Hb_000300_390 Hb_000617_110--Hb_000431_160 Hb_000819_070 Hb_000819_070 Hb_000617_110--Hb_000819_070 Hb_044653_060 Hb_044653_060 Hb_000617_110--Hb_044653_060 Hb_000879_210 Hb_000879_210 Hb_000617_110--Hb_000879_210 Hb_000617_110--Hb_000635_080 Hb_000431_160--Hb_044653_060 Hb_000431_160--Hb_000879_210 Hb_000431_160--Hb_004735_050 Hb_000431_160--Hb_000819_070 Hb_004735_050--Hb_006588_080 Hb_004007_180 Hb_004007_180 Hb_004735_050--Hb_004007_180 Hb_004735_050--Hb_000635_080 Hb_000878_020 Hb_000878_020 Hb_004735_050--Hb_000878_020 Hb_004735_050--Hb_002316_120 Hb_008748_020 Hb_008748_020 Hb_004735_050--Hb_008748_020 Hb_001434_070 Hb_001434_070 Hb_004209_030--Hb_001434_070 Hb_004209_030--Hb_001377_380 Hb_000260_200 Hb_000260_200 Hb_004209_030--Hb_000260_200 Hb_004209_030--Hb_000635_080 Hb_004209_030--Hb_000780_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.8493 21.833 48.5993 104.59 35.416 74.8957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
607.841 1136.8 358.77 167.989 60.2761

CAGE analysis