Hb_000617_110

Information

Type -
Description -
Location Contig617: 81506-83286
Sequence    

Annotation

kegg
ID rcu:RCOM_1433410
description Translationally-controlled tumor protein, putative
nr
ID AEQ20639.1
description translationally controlled tumor protein [Hevea brasiliensis]
swissprot
ID Q5J907
description Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1
trembl
ID R4HIT3
description Translationally controlled tumor protein OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
Gene Ontology
ID GO:0005737
description translationally-controlled tumor protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51270: 81507-83286 , PASA_asmbl_51271: 81507-113327
cDNA
(Sanger)
(ID:Location)		 007_M02.ab1: 81615-113263 , 022_L09.ab1: 81507-83035

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_110 0.0 - - translationally controlled tumor protein [Hevea brasiliensis]
2 Hb_000431_160 0.0695259423 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
3 Hb_004545_130 0.0857217919 - - uncharacterized protein LOC100305465 [Glycine max]
4 Hb_000819_070 0.0988839968 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
5 Hb_044653_060 0.1061330541 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
6 Hb_000879_210 0.1107156458 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
7 Hb_000635_080 0.1128287729 - - 60S ribosomal protein L17A [Hevea brasiliensis]
8 Hb_004735_050 0.1166950934 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_183612_080 0.119681007 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
10 Hb_000318_490 0.1350868608 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
11 Hb_006588_080 0.1353974596 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_001377_380 0.1356990908 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
13 Hb_001434_070 0.136126411 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
14 Hb_004429_110 0.1389734428 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
15 Hb_000172_420 0.1397532816 - - 60S ribosomal protein L30, putative [Ricinus communis]
16 Hb_000853_240 0.1406824037 - - -
17 Hb_000613_170 0.1413907848 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
18 Hb_004223_260 0.1415439283 - - hypothetical protein F383_09277 [Gossypium arboreum]
19 Hb_001266_030 0.1435690051 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
20 Hb_001386_050 0.1454650097 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_000617_110 Hb_000617_110 Hb_000431_160 Hb_000431_160 Hb_000617_110--Hb_000431_160 Hb_004545_130 Hb_004545_130 Hb_000617_110--Hb_004545_130 Hb_000819_070 Hb_000819_070 Hb_000617_110--Hb_000819_070 Hb_044653_060 Hb_044653_060 Hb_000617_110--Hb_044653_060 Hb_000879_210 Hb_000879_210 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080 Hb_000431_160--Hb_044653_060 Hb_000431_160--Hb_004545_130 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000431_160--Hb_000819_070 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_004223_260 Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_003349_070 Hb_003349_070 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000819_070--Hb_000635_080 Hb_001266_030 Hb_001266_030 Hb_044653_060--Hb_001266_030 Hb_000045_210 Hb_000045_210 Hb_044653_060--Hb_000045_210 Hb_044653_060--Hb_000879_210 Hb_044653_060--Hb_004545_130 Hb_000879_210--Hb_004545_130 Hb_000879_210--Hb_000819_070 Hb_008748_020 Hb_008748_020 Hb_000879_210--Hb_008748_020 Hb_000635_080--Hb_001377_380 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000635_080--Hb_006588_080 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8163 4.01367 7.06048 17.6306 9.40359 27.421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.504 293.762 59.8228 29.7449 12.5604

CAGE analysis