Hb_000431_160

Information

Type -
Description -
Location Contig431: 179381-180611
Sequence    

Annotation

kegg
ID tcc:TCM_017227
description SecE/sec61-gamma protein transport protein
nr
ID XP_012070294.1
description PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
swissprot
ID P0DI75
description Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61G2 PE=1 SV=1
trembl
ID D6BQN8
description Protein transport protein SEC61 subunit gamma OS=Jatropha curcas GN=JCGZ_26443 PE=2 SV=1
Gene Ontology
ID GO:0005886
description protein transport protein sec61 subunit gamma-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42227: 179491-180603 , PASA_asmbl_42228: 179511-180513
cDNA
(Sanger)
(ID:Location)		 007_G15.ab1: 179521-180513 , 031_B12.ab1: 179511-180603

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000431_160 0.0 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
2 Hb_000617_110 0.0695259423 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_044653_060 0.0753166663 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
4 Hb_004545_130 0.0983965513 - - uncharacterized protein LOC100305465 [Glycine max]
5 Hb_000879_210 0.1010711353 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
6 Hb_004735_050 0.1165902658 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
7 Hb_000819_070 0.1206219176 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
8 Hb_000318_490 0.1258045765 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
9 Hb_000592_060 0.1275324865 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
10 Hb_001369_400 0.1294018256 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
11 Hb_006588_080 0.1311440484 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
12 Hb_008748_020 0.1314148946 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
13 Hb_000123_160 0.1316860511 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_000635_080 0.1326280721 - - 60S ribosomal protein L17A [Hevea brasiliensis]
15 Hb_001386_050 0.1346369183 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
16 Hb_001266_030 0.1347055045 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
17 Hb_027892_040 0.1357741831 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
18 Hb_000878_020 0.137191596 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
19 Hb_000103_550 0.1376641017 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
20 Hb_000110_170 0.1387895879 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000431_160 Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_000431_160--Hb_000617_110 Hb_044653_060 Hb_044653_060 Hb_000431_160--Hb_044653_060 Hb_004545_130 Hb_004545_130 Hb_000431_160--Hb_004545_130 Hb_000879_210 Hb_000879_210 Hb_000431_160--Hb_000879_210 Hb_004735_050 Hb_004735_050 Hb_000431_160--Hb_004735_050 Hb_000819_070 Hb_000819_070 Hb_000431_160--Hb_000819_070 Hb_000617_110--Hb_004545_130 Hb_000617_110--Hb_000819_070 Hb_000617_110--Hb_044653_060 Hb_000617_110--Hb_000879_210 Hb_000635_080 Hb_000635_080 Hb_000617_110--Hb_000635_080 Hb_001266_030 Hb_001266_030 Hb_044653_060--Hb_001266_030 Hb_000045_210 Hb_000045_210 Hb_044653_060--Hb_000045_210 Hb_044653_060--Hb_000879_210 Hb_044653_060--Hb_004545_130 Hb_004545_130--Hb_000635_080 Hb_001377_380 Hb_001377_380 Hb_004545_130--Hb_001377_380 Hb_004545_130--Hb_004735_050 Hb_004209_030 Hb_004209_030 Hb_004545_130--Hb_004209_030 Hb_000879_210--Hb_004545_130 Hb_000879_210--Hb_000819_070 Hb_008748_020 Hb_008748_020 Hb_000879_210--Hb_008748_020 Hb_006588_080 Hb_006588_080 Hb_004735_050--Hb_006588_080 Hb_004007_180 Hb_004007_180 Hb_004735_050--Hb_004007_180 Hb_004735_050--Hb_000635_080 Hb_000878_020 Hb_000878_020 Hb_004735_050--Hb_000878_020 Hb_002316_120 Hb_002316_120 Hb_004735_050--Hb_002316_120 Hb_004735_050--Hb_008748_020 Hb_004223_260 Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_001369_400 Hb_001369_400 Hb_000819_070--Hb_001369_400 Hb_003349_070 Hb_003349_070 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000819_070--Hb_000635_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4036 7.70509 14.2048 51.1874 20.2916 53.3302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
227.362 621.759 162.796 54.9678 39.8297

CAGE analysis