Hb_001369_400

Information

Type -
Description -
Location Contig1369: 353690-354674
Sequence    

Annotation

kegg
ID rcu:RCOM_1500390
description hypothetical protein
nr
ID XP_012090442.1
description PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R9S5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1500390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10174: 352256-353847 , PASA_asmbl_10176: 353637-353881
cDNA
(Sanger)
(ID:Location)		 008_K13.ab1: 352256-353811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_400 0.0 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
2 Hb_002876_370 0.0993730895 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
3 Hb_000819_070 0.1004549612 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
4 Hb_001159_200 0.1026381314 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
5 Hb_000318_490 0.1124417899 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
6 Hb_000976_250 0.1178442037 - - -
7 Hb_034585_050 0.1247964821 - - -
8 Hb_002918_140 0.1258540082 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
9 Hb_000431_160 0.1294018256 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
10 Hb_000281_230 0.1304343437 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
11 Hb_002518_290 0.1306474228 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
12 Hb_004041_040 0.1366785504 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
13 Hb_001863_420 0.1372724401 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
14 Hb_003086_060 0.1421560806 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
15 Hb_001386_050 0.1425123139 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
16 Hb_003043_120 0.1450405606 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000224_090 0.1454065224 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
18 Hb_000123_160 0.1457386256 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_000260_200 0.1462812807 - - -
20 Hb_003349_070 0.1477639888 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]

Gene co-expression network

sample Hb_001369_400 Hb_001369_400 Hb_002876_370 Hb_002876_370 Hb_001369_400--Hb_002876_370 Hb_000819_070 Hb_000819_070 Hb_001369_400--Hb_000819_070 Hb_001159_200 Hb_001159_200 Hb_001369_400--Hb_001159_200 Hb_000318_490 Hb_000318_490 Hb_001369_400--Hb_000318_490 Hb_000976_250 Hb_000976_250 Hb_001369_400--Hb_000976_250 Hb_034585_050 Hb_034585_050 Hb_001369_400--Hb_034585_050 Hb_002876_370--Hb_001159_200 Hb_002876_370--Hb_000318_490 Hb_002876_370--Hb_000976_250 Hb_003086_060 Hb_003086_060 Hb_002876_370--Hb_003086_060 Hb_000123_160 Hb_000123_160 Hb_002876_370--Hb_000123_160 Hb_004223_260 Hb_004223_260 Hb_000819_070--Hb_004223_260 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_003349_070 Hb_003349_070 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_000819_070--Hb_000635_080 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_000318_490--Hb_000123_160 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_005914_200 Hb_005914_200 Hb_000976_250--Hb_005914_200 Hb_002518_290 Hb_002518_290 Hb_000976_250--Hb_002518_290 Hb_012539_020 Hb_012539_020 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_002918_140 Hb_002918_140 Hb_034585_050--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_034585_050--Hb_006738_010 Hb_010594_030 Hb_010594_030 Hb_034585_050--Hb_010594_030 Hb_003043_120 Hb_003043_120 Hb_034585_050--Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_034585_050--Hb_011245_020 Hb_017862_010 Hb_017862_010 Hb_034585_050--Hb_017862_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75723 0.189909 0.198074 1.40459 1.8659 3.77504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5827 21.7123 9.06327 1.9835 2.81115

CAGE analysis