Hb_003086_060

Information

Type -
Description -
Location Contig3086: 48735-52681
Sequence    

Annotation

kegg
ID rcu:RCOM_0422060
description hypothetical protein
nr
ID XP_012066984.1
description PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02958 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_060 0.0 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
2 Hb_002518_290 0.0982052039 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
3 Hb_062135_020 0.1082354329 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
4 Hb_003185_050 0.1227191722 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
5 Hb_000236_150 0.1260588583 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
6 Hb_001159_200 0.128327735 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_002918_140 0.1292392867 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_000836_130 0.1318955297 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
9 Hb_002759_240 0.1332309381 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
10 Hb_000302_290 0.1345177256 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
11 Hb_002719_080 0.1347148217 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
12 Hb_005839_110 0.1354481414 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
13 Hb_000224_090 0.1354516672 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
14 Hb_146225_010 0.1361370011 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
15 Hb_003929_120 0.1379980568 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
16 Hb_027380_180 0.1383170098 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
17 Hb_005000_180 0.1399731739 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
18 Hb_001863_420 0.1403617596 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
19 Hb_003581_220 0.1409406497 - - unnamed protein product [Vitis vinifera]
20 Hb_005505_020 0.1415943042 - - Potassium channel AKT1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_060 Hb_003086_060 Hb_002518_290 Hb_002518_290 Hb_003086_060--Hb_002518_290 Hb_062135_020 Hb_062135_020 Hb_003086_060--Hb_062135_020 Hb_003185_050 Hb_003185_050 Hb_003086_060--Hb_003185_050 Hb_000236_150 Hb_000236_150 Hb_003086_060--Hb_000236_150 Hb_001159_200 Hb_001159_200 Hb_003086_060--Hb_001159_200 Hb_002918_140 Hb_002918_140 Hb_003086_060--Hb_002918_140 Hb_002518_290--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_002518_290--Hb_000976_250 Hb_012539_020 Hb_012539_020 Hb_002518_290--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_005000_180 Hb_005000_180 Hb_062135_020--Hb_005000_180 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_062135_020--Hb_000976_250 Hb_062135_020--Hb_000236_150 Hb_000302_290 Hb_000302_290 Hb_062135_020--Hb_000302_290 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_002374_390 Hb_002374_390 Hb_003185_050--Hb_002374_390 Hb_000905_180 Hb_000905_180 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_001016_090 Hb_001016_090 Hb_003185_050--Hb_001016_090 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_001369_400 Hb_001369_400 Hb_001159_200--Hb_001369_400 Hb_000281_230 Hb_000281_230 Hb_001159_200--Hb_000281_230 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_000318_490 Hb_000318_490 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.11023 6.8806 2.89768 4.44155 10.1763 11.9797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.7168 82.1009 54.2105 16.8593 15.4045

CAGE analysis