Hb_000224_090

Information

Type -
Description -
Location Contig224: 61392-64743
Sequence    

Annotation

kegg
ID aml:100470826
description eukaryotic translation initiation factor 1A, X-chromosomal-like
nr
ID KHG13840.1
description Eukaryotic translation initiation factor 1A [Gossypium arboreum]
swissprot
ID Q3IT14
description Translation initiation factor 1A OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=eif1a PE=3 SV=1
trembl
ID A0A0B0NM01
description Eukaryotic translation initiation factor 1A OS=Gossypium arboreum GN=F383_01424 PE=3 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23289: 61023-62484 , PASA_asmbl_23290: 61023-62484
cDNA
(Sanger)
(ID:Location)		 011_F08.ab1: 61229-62484 , 011_O21.ab1: 61245-62484 , 016_N14.ab1: 61287-62484 , 017_D10.ab1: 61373-62467 , 018_I24.ab1: 61282-61842 , 022_F21.ab1: 61293-62484 , 025_B02.ab1: 61245-62484 , 027_N23.ab1: 61222-61842 , 035_A24.ab1: 61233-62484 , 037_G01.ab1: 61223-62484 , 037_M01.ab1: 61228-62484 , 042_C14.ab1: 61285-62481 , 049_M08.ab1: 61260-62484 , 050_A12.ab1: 61247-62484

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_090 0.0 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
2 Hb_000236_150 0.0698162248 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
3 Hb_003053_030 0.0742449353 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
4 Hb_000069_100 0.0778552773 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000163_130 0.0781200875 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
6 Hb_000722_040 0.0824498452 - - -
7 Hb_012539_020 0.0848327333 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
8 Hb_000193_200 0.0868735705 - - rotamase, putative [Ricinus communis]
9 Hb_001545_060 0.0876574475 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_003929_120 0.0888256241 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
11 Hb_000905_180 0.0892893158 - - 60S ribosomal protein L31A [Hevea brasiliensis]
12 Hb_017862_010 0.0892982466 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
13 Hb_004041_040 0.0893820335 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
14 Hb_002097_060 0.0925739104 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_183086_040 0.093574165 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
16 Hb_003938_180 0.0940669535 - - lesion inducing family protein [Populus trichocarpa]
17 Hb_000389_080 0.0943558871 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_002835_320 0.0947332051 - - 60S ribosomal protein L27B [Hevea brasiliensis]
19 Hb_000364_030 0.0959915559 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000085_330 0.096005525 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]

Gene co-expression network

sample Hb_000224_090 Hb_000224_090 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000069_100 Hb_000069_100 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000163_130--Hb_003053_030 Hb_003561_030 Hb_003561_030 Hb_000722_040--Hb_003561_030 Hb_000975_110 Hb_000975_110 Hb_000722_040--Hb_000975_110 Hb_000024_030 Hb_000024_030 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_011161_050 Hb_011161_050 Hb_000722_040--Hb_011161_050 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_012539_020--Hb_005914_200 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
195.065 73.1842 44.9982 185.408 174.489 303.124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
829.825 1079.13 646.072 233.579 144.697

CAGE analysis