Hb_005663_120

Information

Type -
Description -
Location Contig5663: 132499-132831
Sequence    

Annotation

kegg
ID rcu:RCOM_1600160
description hypothetical protein
nr
ID XP_012073693.1
description PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08138 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105635265

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49075: 130305-131871 , PASA_asmbl_49076: 132357-133103
cDNA
(Sanger)
(ID:Location)		 004_L02.ab1: 132435-133103 , 016_I21.ab1: 132357-132978 , 035_L12.ab1: 132435-133103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005663_120 0.0 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
2 Hb_000300_390 0.0687567283 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
3 Hb_012539_020 0.0749845515 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
4 Hb_002316_120 0.0862784293 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
5 Hb_032969_030 0.0863366555 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_005527_040 0.0885649823 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
7 Hb_000389_080 0.0887031291 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
8 Hb_050806_010 0.0917311901 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
9 Hb_001232_140 0.0930413804 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
10 Hb_007317_160 0.0937954162 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
11 Hb_020419_020 0.0946171115 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_120823_010 0.0946233367 - - -
13 Hb_001096_030 0.0984012121 - - uridylate kinase plant, putative [Ricinus communis]
14 Hb_005000_180 0.1004251535 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
15 Hb_001314_040 0.1017302494 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
16 Hb_001155_040 0.1029553668 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
17 Hb_000789_110 0.1034098363 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
18 Hb_005914_200 0.1042589109 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
19 Hb_000236_150 0.1054468713 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_005278_040 0.1060273788 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_005663_120 Hb_005663_120 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_000300_390--Hb_032969_030 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_002316_120 Hb_002316_120--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_001519_030 Hb_001519_030 Hb_005527_040--Hb_001519_030 Hb_006569_100 Hb_006569_100 Hb_005527_040--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_005527_040--Hb_001005_080 Hb_004449_200 Hb_004449_200 Hb_005527_040--Hb_004449_200 Hb_000122_020 Hb_000122_020 Hb_005527_040--Hb_000122_020 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2534 5.79071 13.3956 36.1352 8.56142 19.3288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.533 119.298 75.463 24.3405 11.2305

CAGE analysis