Hb_001785_040

Information

Type -
Description -
Location Contig1785: 128126-131366
Sequence    

Annotation

kegg
ID pmum:103333591
description cytochrome b5 isoform A
nr
ID AAT84458.1
description cytochrome b5 isoform Cb5-A [Vernicia fordii]
swissprot
ID Q42342
description Cytochrome b5 isoform E OS=Arabidopsis thaliana GN=CYTB5-E PE=1 SV=2
trembl
ID Q5V9L4
description Cytochrome b5 isoform Cb5-A OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0005774
description cytochrome b5 isoform e-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17156: 128165-131358 , PASA_asmbl_17157: 129610-129779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001785_040 0.0 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
2 Hb_001604_030 0.068310059 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
3 Hb_000260_200 0.0891674414 - - -
4 Hb_002603_150 0.0922631851 - - PREDICTED: protein yippee-like [Jatropha curcas]
5 Hb_032969_030 0.0938641004 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_000012_100 0.0985663629 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
7 Hb_089100_020 0.1019641226 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
8 Hb_017862_010 0.1033077922 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
9 Hb_007575_070 0.1052749918 - - Histone H3.2 [Glycine soja]
10 Hb_000163_210 0.1070058193 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
11 Hb_000300_390 0.1077141628 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
12 Hb_183086_040 0.1097006814 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
13 Hb_000805_130 0.111187706 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000789_110 0.1129293128 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
15 Hb_001634_040 0.1138363907 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
16 Hb_001424_020 0.1163018236 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
17 Hb_000069_100 0.1165490234 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003181_050 0.1181169485 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
19 Hb_002316_120 0.1187643524 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
20 Hb_000083_090 0.1190388573 - - immunophilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_001785_040 Hb_001785_040 Hb_001604_030 Hb_001604_030 Hb_001785_040--Hb_001604_030 Hb_000260_200 Hb_000260_200 Hb_001785_040--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001785_040--Hb_002603_150 Hb_032969_030 Hb_032969_030 Hb_001785_040--Hb_032969_030 Hb_000012_100 Hb_000012_100 Hb_001785_040--Hb_000012_100 Hb_089100_020 Hb_089100_020 Hb_001785_040--Hb_089100_020 Hb_023386_010 Hb_023386_010 Hb_001604_030--Hb_023386_010 Hb_001604_030--Hb_000012_100 Hb_000789_110 Hb_000789_110 Hb_001604_030--Hb_000789_110 Hb_001604_030--Hb_000260_200 Hb_001604_030--Hb_002603_150 Hb_000163_210 Hb_000163_210 Hb_000260_200--Hb_000163_210 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000069_140 Hb_000069_140 Hb_000260_200--Hb_000069_140 Hb_001424_020 Hb_001424_020 Hb_000260_200--Hb_001424_020 Hb_012539_020 Hb_012539_020 Hb_000260_200--Hb_012539_020 Hb_017862_010 Hb_017862_010 Hb_002603_150--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_002603_150--Hb_000069_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_000300_390 Hb_000300_390 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_005663_120 Hb_005663_120 Hb_032969_030--Hb_005663_120 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001157_010 Hb_001157_010 Hb_032969_030--Hb_001157_010 Hb_000181_300 Hb_000181_300 Hb_000012_100--Hb_000181_300 Hb_000193_120 Hb_000193_120 Hb_000012_100--Hb_000193_120 Hb_001634_040 Hb_001634_040 Hb_000012_100--Hb_001634_040 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_000696_220 Hb_000696_220 Hb_089100_020--Hb_000696_220 Hb_000853_240 Hb_000853_240 Hb_089100_020--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_089100_020--Hb_003198_010 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_003181_050 Hb_003181_050 Hb_089100_020--Hb_003181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.2326 16.159 42.4963 37.3992 30.1231 53.5281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
288.009 341.905 189.403 39.4837 31.7105

CAGE analysis