Hb_023386_010

Information

Type -
Description -
Location Contig23386: 9313-11047
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07400g
description POPTRDRAFT_830718; histidine triad family protein
nr
ID XP_012069974.1
description PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
swissprot
ID Q5R9L4
description Histidine triad nucleotide-binding protein 3 OS=Pongo abelii GN=HINT3 PE=2 SV=1
trembl
ID D7TN51
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00530 PE=4 SV=1
Gene Ontology
ID GO:0005777
description histidine triad nucleotide-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24555: 8281-10893 , PASA_asmbl_24556: 8270-10944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_010 0.0 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
2 Hb_054074_010 0.0906085041 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
3 Hb_001604_030 0.1005364644 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
4 Hb_000820_130 0.1012388899 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
5 Hb_001304_140 0.1134105086 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_000789_110 0.1149536965 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
7 Hb_004994_260 0.1162725896 - - Remorin, putative [Ricinus communis]
8 Hb_000312_090 0.1168612743 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
9 Hb_000046_260 0.1202043563 - - acyl carrier protein, putative [Ricinus communis]
10 Hb_010582_010 0.1207934282 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
11 Hb_000027_150 0.1248338515 - - mitochondrial carrier protein, putative [Ricinus communis]
12 Hb_004449_200 0.1265576572 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
13 Hb_001221_310 0.1275049547 - - sec61 gamma subunit, putative [Ricinus communis]
14 Hb_002214_050 0.1284596338 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
15 Hb_003988_040 0.1288742553 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
16 Hb_001045_080 0.1289364056 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
17 Hb_000367_210 0.1289782125 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
18 Hb_183086_040 0.1293601501 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
19 Hb_008699_020 0.1295054727 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
20 Hb_000270_720 0.13037326 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]

Gene co-expression network

sample Hb_023386_010 Hb_023386_010 Hb_054074_010 Hb_054074_010 Hb_023386_010--Hb_054074_010 Hb_001604_030 Hb_001604_030 Hb_023386_010--Hb_001604_030 Hb_000820_130 Hb_000820_130 Hb_023386_010--Hb_000820_130 Hb_001304_140 Hb_001304_140 Hb_023386_010--Hb_001304_140 Hb_000789_110 Hb_000789_110 Hb_023386_010--Hb_000789_110 Hb_004994_260 Hb_004994_260 Hb_023386_010--Hb_004994_260 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_054074_010--Hb_001604_030 Hb_001785_040 Hb_001785_040 Hb_001604_030--Hb_001785_040 Hb_000012_100 Hb_000012_100 Hb_001604_030--Hb_000012_100 Hb_001604_030--Hb_000789_110 Hb_000260_200 Hb_000260_200 Hb_001604_030--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001604_030--Hb_002603_150 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_076693_040 Hb_076693_040 Hb_001304_140--Hb_076693_040 Hb_002391_220 Hb_002391_220 Hb_001304_140--Hb_002391_220 Hb_001304_140--Hb_010582_010 Hb_001424_020 Hb_001424_020 Hb_001304_140--Hb_001424_020 Hb_000159_070 Hb_000159_070 Hb_001304_140--Hb_000159_070 Hb_000789_110--Hb_002316_120 Hb_000789_110--Hb_000270_720 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_000789_110--Hb_004007_180 Hb_002214_050 Hb_002214_050 Hb_004994_260--Hb_002214_050 Hb_000907_090 Hb_000907_090 Hb_004994_260--Hb_000907_090 Hb_007926_060 Hb_007926_060 Hb_004994_260--Hb_007926_060 Hb_010344_040 Hb_010344_040 Hb_004994_260--Hb_010344_040 Hb_000722_040 Hb_000722_040 Hb_004994_260--Hb_000722_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0641 8.43721 18.223 35.6931 15.2427 29.9322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.555 105.98 45.3694 16.6087 7.08979

CAGE analysis