Hb_000163_130

Information

Type -
Description -
Location Contig163: 84633-86029
Sequence    

Annotation

kegg
ID cic:CICLE_v10022870mg
description hypothetical protein
nr
ID XP_006444361.1
description hypothetical protein CICLE_v10022870mg [Citrus clementina]
swissprot
ID Q9M9W1
description 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1
trembl
ID A0A067HH07
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033169mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l22-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14811: 84710-86036
cDNA
(Sanger)
(ID:Location)		 008_M05.ab1: 84713-85994 , 013_B08.ab1: 84712-86036 , 017_F22.ab1: 84712-85995 , 025_H18.ab1: 84712-86036 , 031_I15.ab1: 84710-85994

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_130 0.0 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
2 Hb_001780_050 0.043319209 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
3 Hb_002835_320 0.0539885801 - - 60S ribosomal protein L27B [Hevea brasiliensis]
4 Hb_000905_180 0.0690229108 - - 60S ribosomal protein L31A [Hevea brasiliensis]
5 Hb_004754_070 0.0706556823 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
6 Hb_000236_150 0.070795205 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_003053_030 0.0711878081 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
8 Hb_000085_330 0.0719135757 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
9 Hb_000367_210 0.0751039508 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
10 Hb_005914_200 0.0752539978 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
11 Hb_000389_080 0.0779904344 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_000224_090 0.0781200875 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
13 Hb_012539_020 0.0821656778 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
14 Hb_148930_010 0.0826027901 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
15 Hb_011161_050 0.0833969663 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
16 Hb_000820_130 0.0834685272 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
17 Hb_007304_070 0.0839442983 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
18 Hb_187083_010 0.083967457 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
19 Hb_012395_130 0.0849654727 - - Os02g0814700 [Oryza sativa Japonica Group]
20 Hb_001016_090 0.0852022491 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000163_130 Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000163_130--Hb_001780_050 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000163_130--Hb_003053_030 Hb_005914_200 Hb_005914_200 Hb_001780_050--Hb_005914_200 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050 Hb_000905_180--Hb_000236_150 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_004754_070--Hb_012395_130 Hb_004754_070--Hb_005914_200 Hb_011377_020 Hb_011377_020 Hb_004754_070--Hb_011377_020 Hb_004007_180 Hb_004007_180 Hb_004754_070--Hb_004007_180 Hb_000236_150--Hb_005914_200 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000236_150--Hb_012539_020 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_148200_010 Hb_148200_010 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
120.232 43.5265 60.0154 144.97 97.8644 211.336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
461.893 746.576 311.501 167.715 65.6443

CAGE analysis