Hb_011377_020

Information

Type -
Description -
Location Contig11377: 17850-20168
Sequence    

Annotation

kegg
ID crb:CARUB_v10018269mg
description hypothetical protein
nr
ID XP_006292074.1
description hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
swissprot
ID Q9M2F1
description 40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2
trembl
ID R0FQY1
description 40S ribosomal protein S27 (Fragment) OS=Capsella rubella GN=CARUB_v10018269mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s27-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04114: 17788-20147 , PASA_asmbl_04115: 18049-19530 , PASA_asmbl_04116: 18604-18752
cDNA
(Sanger)
(ID:Location)		 021_G04.ab1: 17814-20147

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011377_020 0.0 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
2 Hb_000599_280 0.0596735581 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
3 Hb_012395_130 0.0680744159 - - Os02g0814700 [Oryza sativa Japonica Group]
4 Hb_004754_070 0.0762433065 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
5 Hb_006588_080 0.0822781813 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
6 Hb_001780_050 0.085312117 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
7 Hb_004007_180 0.0884984824 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
8 Hb_001307_210 0.0942375081 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_005914_200 0.0944670195 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
10 Hb_120823_010 0.0953962057 - - -
11 Hb_003020_330 0.0967670927 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
12 Hb_002316_120 0.0984107834 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
13 Hb_000270_720 0.0993010027 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
14 Hb_007120_090 0.0993799988 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
15 Hb_012539_020 0.1009252472 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
16 Hb_000062_390 0.101361013 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
17 Hb_000454_180 0.1023750208 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
18 Hb_002391_220 0.1036789797 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
19 Hb_001085_270 0.1043250353 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
20 Hb_000997_120 0.1044181508 - - 40S ribosomal protein S15E [Hevea brasiliensis]

Gene co-expression network

sample Hb_011377_020 Hb_011377_020 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_012395_130 Hb_012395_130 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_004007_180 Hb_004007_180 Hb_011377_020--Hb_004007_180 Hb_000270_720 Hb_000270_720 Hb_000599_280--Hb_000270_720 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_012395_130--Hb_004754_070 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_000997_120 Hb_000997_120 Hb_012395_130--Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_012395_130--Hb_007120_090 Hb_004754_070--Hb_001780_050 Hb_005914_200 Hb_005914_200 Hb_004754_070--Hb_005914_200 Hb_000163_130 Hb_000163_130 Hb_004754_070--Hb_000163_130 Hb_004754_070--Hb_004007_180 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_006588_080--Hb_000172_420 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_005914_200 Hb_000236_150 Hb_000236_150 Hb_001780_050--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_001780_050--Hb_012539_020 Hb_004007_180--Hb_000270_720 Hb_004007_180--Hb_002316_120 Hb_004007_180--Hb_006588_080 Hb_000789_110 Hb_000789_110 Hb_004007_180--Hb_000789_110 Hb_004007_180--Hb_004735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7179 3.04024 12.8607 23.0946 9.35176 22.3278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.8981 132.977 35.499 27.0785 19.1925

CAGE analysis