Hb_000270_720

Information

Type -
Description -
Location Contig270: 599353-602055
Sequence    

Annotation

kegg
ID pop:POPTR_0015s08460g
description hypothetical protein
nr
ID XP_006374514.1
description hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
swissprot
ID Q7X843
description RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2
trembl
ID U5FQS0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08460g PE=4 SV=1
Gene Ontology
ID GO:0016021
description ring-h2 finger protein atl48-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28272: 599329-601972
cDNA
(Sanger)
(ID:Location)		 027_A22.ab1: 599329-601929 , 034_D19.ab1: 599329-601929

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_720 0.0 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
2 Hb_000789_110 0.0579714087 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
3 Hb_002316_120 0.0630749997 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
4 Hb_004007_180 0.0685471731 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
5 Hb_000599_280 0.0711256258 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
6 Hb_000820_130 0.0794245329 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
7 Hb_004755_030 0.0826004775 - - EG964 [Manihot glaziovii]
8 Hb_000172_420 0.0862866593 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_002391_220 0.0889066867 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
10 Hb_000069_140 0.0926882842 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
11 Hb_011377_020 0.0993010027 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
12 Hb_000062_390 0.09984736 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
13 Hb_006588_080 0.1002293919 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
14 Hb_000260_200 0.1005024711 - - -
15 Hb_001155_040 0.1017199885 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
16 Hb_008887_040 0.1020091644 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
17 Hb_000300_390 0.1020954594 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
18 Hb_001221_310 0.1045808984 - - sec61 gamma subunit, putative [Ricinus communis]
19 Hb_000159_070 0.1067690188 - - JHL03K20.4 [Jatropha curcas]
20 Hb_000367_210 0.1094114215 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000270_720 Hb_000270_720 Hb_000789_110 Hb_000789_110 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_000789_110--Hb_002316_120 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_002316_120--Hb_000300_390 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_002316_120--Hb_004007_180 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420 Hb_000820_130--Hb_002316_120 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_004755_030--Hb_000789_110 Hb_008887_040 Hb_008887_040 Hb_004755_030--Hb_008887_040 Hb_004755_030--Hb_004007_180 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.011 4.74318 20.9656 48.0603 20.1186 36.2233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.721 231.335 57.7326 26.6026 22.8529

CAGE analysis