Hb_000975_180

Information

Type -
Description -
Location Contig975: 120565-122312
Sequence    

Annotation

kegg
ID tcc:TCM_041879
description hypothetical protein
nr
ID XP_007016482.1
description Uncharacterized protein TCM_041879 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GXA1
description Uncharacterized protein OS=Theobroma cacao GN=TCM_041879 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64002: 120648-122280 , PASA_asmbl_64003: 121474-121606
cDNA
(Sanger)
(ID:Location)		 021_K17.ab1: 120823-122092 , 047_L24.ab1: 120676-122252 , 047_N08.ab1: 120824-122252 , 047_N22.ab1: 120676-122252

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_180 0.0 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
2 Hb_021924_010 0.0895838214 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
3 Hb_001488_400 0.1088902642 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
4 Hb_000130_100 0.1150602142 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
5 Hb_000270_720 0.1175688165 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
6 Hb_004755_030 0.1204896869 - - EG964 [Manihot glaziovii]
7 Hb_000789_110 0.1266848777 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
8 Hb_001221_310 0.1268830102 - - sec61 gamma subunit, putative [Ricinus communis]
9 Hb_000272_050 0.1306583763 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
10 Hb_000948_220 0.1309226464 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_000463_130 0.1313342781 - - unnamed protein product [Coffea canephora]
12 Hb_005245_070 0.1324433363 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
13 Hb_002838_030 0.1334927576 - - 40S ribosomal protein S25A [Hevea brasiliensis]
14 Hb_004007_180 0.1343368251 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
15 Hb_002316_120 0.1357913889 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
16 Hb_014834_030 0.135882738 - - -
17 Hb_000820_130 0.1360173672 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
18 Hb_023732_060 0.1366744015 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
19 Hb_003226_220 0.1368286189 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
20 Hb_006452_040 0.138108093 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000975_180 Hb_000975_180 Hb_021924_010 Hb_021924_010 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_001488_400--Hb_003226_220 Hb_000272_050 Hb_000272_050 Hb_001488_400--Hb_000272_050 Hb_000212_210 Hb_000212_210 Hb_001488_400--Hb_000212_210 Hb_124055_010 Hb_124055_010 Hb_001488_400--Hb_124055_010 Hb_003018_050 Hb_003018_050 Hb_000130_100--Hb_003018_050 Hb_006452_040 Hb_006452_040 Hb_000130_100--Hb_006452_040 Hb_002324_010 Hb_002324_010 Hb_000130_100--Hb_002324_010 Hb_000107_300 Hb_000107_300 Hb_000130_100--Hb_000107_300 Hb_005045_070 Hb_005045_070 Hb_000130_100--Hb_005045_070 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_000270_720--Hb_004755_030 Hb_004755_030--Hb_000789_110 Hb_008887_040 Hb_008887_040 Hb_004755_030--Hb_008887_040 Hb_004755_030--Hb_004007_180 Hb_004755_030--Hb_002316_120 Hb_000789_110--Hb_002316_120 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.2706 9.30397 28.434 123.831 25.0127 46.6208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
183.587 272.415 52.7224 27.2461 16.6264

CAGE analysis