Hb_000130_100

Information

Type -
Description -
Location Contig130: 46977-51566
Sequence    

Annotation

kegg
ID cic:CICLE_v10022662mg
description hypothetical protein
nr
ID XP_006442519.1
description hypothetical protein CICLE_v10022662mg [Citrus clementina]
swissprot
ID Q9FZ48
description Ubiquitin-conjugating enzyme E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1
trembl
ID A0A067E089
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031783mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin-conjugating enzyme e2 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08879: 46169-51766 , PASA_asmbl_08880: 50917-51157 , PASA_asmbl_08882: 48186-48455
cDNA
(Sanger)
(ID:Location)		 010_E03.ab1: 46167-51729 , 022_G05.ab1: 46165-51644 , 023_E02.ab1: 46167-51762 , 028_D20.ab1: 46223-51730 , 036_P24.ab1: 46169-51766 , 052_F17.ab1: 46169-51764

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000130_100 0.0 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
2 Hb_003018_050 0.1117385641 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_000975_180 0.1150602142 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
4 Hb_006452_040 0.1177159127 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
5 Hb_002324_010 0.1195791307 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
6 Hb_000107_300 0.1205425158 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
7 Hb_005045_070 0.1219760077 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
8 Hb_000363_320 0.123911192 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
9 Hb_006452_110 0.1246863218 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
10 Hb_000084_260 0.127188807 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
11 Hb_001158_150 0.1285929222 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
12 Hb_000087_130 0.1291363336 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
13 Hb_000463_130 0.1296193715 - - unnamed protein product [Coffea canephora]
14 Hb_006915_040 0.1338661172 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
15 Hb_000322_140 0.1348578561 - - hypothetical protein RCOM_1047200 [Ricinus communis]
16 Hb_000215_330 0.13565781 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
17 Hb_033376_010 0.1367647705 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
18 Hb_003376_190 0.1373925129 - - syntaxin, putative [Ricinus communis]
19 Hb_014834_030 0.1382525011 - - -
20 Hb_002631_260 0.1384181875 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]

Gene co-expression network

sample Hb_000130_100 Hb_000130_100 Hb_003018_050 Hb_003018_050 Hb_000130_100--Hb_003018_050 Hb_000975_180 Hb_000975_180 Hb_000130_100--Hb_000975_180 Hb_006452_040 Hb_006452_040 Hb_000130_100--Hb_006452_040 Hb_002324_010 Hb_002324_010 Hb_000130_100--Hb_002324_010 Hb_000107_300 Hb_000107_300 Hb_000130_100--Hb_000107_300 Hb_005045_070 Hb_005045_070 Hb_000130_100--Hb_005045_070 Hb_002631_020 Hb_002631_020 Hb_003018_050--Hb_002631_020 Hb_003018_050--Hb_006452_040 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_021924_010 Hb_021924_010 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_006452_040--Hb_002631_020 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_002324_010--Hb_005045_070 Hb_000384_120 Hb_000384_120 Hb_002324_010--Hb_000384_120 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040 Hb_000215_330 Hb_000215_330 Hb_000107_300--Hb_000215_330 Hb_002314_010 Hb_002314_010 Hb_000107_300--Hb_002314_010 Hb_000107_300--Hb_003376_190 Hb_002303_060 Hb_002303_060 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_005045_070--Hb_001172_100 Hb_005045_070--Hb_072922_020 Hb_005045_070--Hb_006452_040 Hb_000087_130 Hb_000087_130 Hb_005045_070--Hb_000087_130 Hb_005045_070--Hb_003376_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
248.717 85.4033 254.83 1012.82 137.504 319.338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
939.153 1332.89 565.499 166.074 133.334

CAGE analysis