Hb_000215_330

Information

Type -
Description -
Location Contig215: 256359-258076
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15350g
description POPTRDRAFT_717550; clathrin adaptor complex small chain family protein
nr
ID XP_012076827.1
description PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
swissprot
ID O82201
description AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1
trembl
ID A0A067KFM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07339 PE=4 SV=1
Gene Ontology
ID GO:0016020
description ap-4 complex subunit sigma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22210: 256474-258070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_330 0.0 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
2 Hb_005306_070 0.054887997 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
3 Hb_000107_300 0.0583254693 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
4 Hb_002314_010 0.0632599994 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
5 Hb_003376_190 0.0741289221 - - syntaxin, putative [Ricinus communis]
6 Hb_003494_050 0.0875725827 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
7 Hb_002303_060 0.0899341883 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002324_010 0.0911003082 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
9 Hb_005269_080 0.0913318516 - - protein with unknown function [Ricinus communis]
10 Hb_000768_130 0.0976028002 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
11 Hb_000087_130 0.0976796385 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
12 Hb_001053_140 0.0995929776 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
13 Hb_006915_040 0.1017782807 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_000463_130 0.1047341315 - - unnamed protein product [Coffea canephora]
15 Hb_072922_020 0.1056045028 - - SNARE-like superfamily protein [Theobroma cacao]
16 Hb_000739_140 0.1065770316 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
17 Hb_000948_220 0.1073530064 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
18 Hb_001410_060 0.1077984332 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
19 Hb_002000_140 0.1099075002 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
20 Hb_000189_240 0.112166165 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]

Gene co-expression network

sample Hb_000215_330 Hb_000215_330 Hb_005306_070 Hb_005306_070 Hb_000215_330--Hb_005306_070 Hb_000107_300 Hb_000107_300 Hb_000215_330--Hb_000107_300 Hb_002314_010 Hb_002314_010 Hb_000215_330--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000215_330--Hb_003376_190 Hb_003494_050 Hb_003494_050 Hb_000215_330--Hb_003494_050 Hb_002303_060 Hb_002303_060 Hb_000215_330--Hb_002303_060 Hb_000739_140 Hb_000739_140 Hb_005306_070--Hb_000739_140 Hb_005306_070--Hb_000107_300 Hb_001410_060 Hb_001410_060 Hb_005306_070--Hb_001410_060 Hb_005306_070--Hb_003494_050 Hb_005269_080 Hb_005269_080 Hb_005306_070--Hb_005269_080 Hb_000107_300--Hb_002314_010 Hb_000107_300--Hb_003376_190 Hb_000107_300--Hb_002303_060 Hb_000826_100 Hb_000826_100 Hb_000107_300--Hb_000826_100 Hb_002314_010--Hb_002303_060 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_003605_160 Hb_003605_160 Hb_002314_010--Hb_003605_160 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_003376_190--Hb_005269_080 Hb_006915_040 Hb_006915_040 Hb_003376_190--Hb_006915_040 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_006573_020 Hb_006573_020 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002303_060--Hb_003605_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1976 6.7635 21.8524 47.177 8.64667 15.9755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0149 86.6405 26.1789 16.5934 18.5067

CAGE analysis