Hb_006915_040

Information

Type -
Description -
Location Contig6915: 31336-35139
Sequence    

Annotation

kegg
ID egr:104444830
description prefoldin subunit 6
nr
ID XP_010056888.1
description PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
swissprot
ID Q03958
description Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1
trembl
ID A0A059C611
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02397 PE=4 SV=1
Gene Ontology
ID GO:0005829
description prefoldin subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54387: 26990-30406 , PASA_asmbl_54389: 31122-35121 , PASA_asmbl_54390: 32027-32279
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_040 0.0 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
2 Hb_000087_130 0.0671451842 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
3 Hb_000189_240 0.0730721261 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
4 Hb_002000_140 0.0763977405 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
5 Hb_179296_010 0.0800776434 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
6 Hb_174865_010 0.0825649076 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
7 Hb_003376_190 0.0855759861 - - syntaxin, putative [Ricinus communis]
8 Hb_001155_040 0.0866076109 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
9 Hb_072922_020 0.0872519243 - - SNARE-like superfamily protein [Theobroma cacao]
10 Hb_000356_090 0.087704367 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
11 Hb_003018_050 0.0881616153 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
12 Hb_017491_060 0.0898063736 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
13 Hb_003018_020 0.0911155969 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
14 Hb_007441_300 0.0920566364 - - ATP binding protein, putative [Ricinus communis]
15 Hb_005463_140 0.0930524823 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
16 Hb_006452_040 0.0932004069 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
17 Hb_000107_300 0.0938299209 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
18 Hb_005269_080 0.0954000774 - - protein with unknown function [Ricinus communis]
19 Hb_009182_010 0.0954133679 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
20 Hb_003605_160 0.0954930166 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]

Gene co-expression network

sample Hb_006915_040 Hb_006915_040 Hb_000087_130 Hb_000087_130 Hb_006915_040--Hb_000087_130 Hb_000189_240 Hb_000189_240 Hb_006915_040--Hb_000189_240 Hb_002000_140 Hb_002000_140 Hb_006915_040--Hb_002000_140 Hb_179296_010 Hb_179296_010 Hb_006915_040--Hb_179296_010 Hb_174865_010 Hb_174865_010 Hb_006915_040--Hb_174865_010 Hb_003376_190 Hb_003376_190 Hb_006915_040--Hb_003376_190 Hb_001155_040 Hb_001155_040 Hb_000087_130--Hb_001155_040 Hb_072922_020 Hb_072922_020 Hb_000087_130--Hb_072922_020 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000384_120 Hb_000384_120 Hb_000087_130--Hb_000384_120 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_002000_140 Hb_003605_160 Hb_003605_160 Hb_000189_240--Hb_003605_160 Hb_002303_060 Hb_002303_060 Hb_000189_240--Hb_002303_060 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_179296_010--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_179296_010--Hb_000735_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_179296_010--Hb_000676_160 Hb_179296_010--Hb_001512_080 Hb_174865_010--Hb_000735_040 Hb_174865_010--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000107_300 Hb_000107_300 Hb_003376_190--Hb_000107_300 Hb_002324_010 Hb_002324_010 Hb_003376_190--Hb_002324_010 Hb_000215_330 Hb_000215_330 Hb_003376_190--Hb_000215_330 Hb_005235_030 Hb_005235_030 Hb_003376_190--Hb_005235_030 Hb_003376_190--Hb_005269_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3956 4.72809 17.3699 32.1661 8.99438 18.5039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3954 66.495 26.9361 21.4788 11.0473

CAGE analysis