Hb_000384_120

Information

Type transcription factor
Description TF Family: Whirly
Location Contig384: 153682-160312
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04700g
description POPTRDRAFT_414440; hypothetical protein
nr
ID XP_012079715.1
description PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
swissprot
ID D9J034
description Single-stranded DNA-bindig protein WHY2, mitochondrial OS=Solanum tuberosum GN=WHY2 PE=1 SV=1
trembl
ID A0A067KIF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14839 PE=4 SV=1
Gene Ontology
ID GO:0003677
description single-stranded dna-bindig protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38698: 153709-160300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000384_120 0.0 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
2 Hb_072922_020 0.0591047997 - - SNARE-like superfamily protein [Theobroma cacao]
3 Hb_000417_260 0.0686941531 - - protein with unknown function [Ricinus communis]
4 Hb_003880_030 0.0696665208 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
5 Hb_000922_040 0.0714703597 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
6 Hb_005269_080 0.072860474 - - protein with unknown function [Ricinus communis]
7 Hb_002324_010 0.0763923767 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
8 Hb_001172_100 0.0781173299 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
9 Hb_000087_130 0.0795322869 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
10 Hb_005463_140 0.0817824572 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
11 Hb_000254_050 0.0843027056 - - hypothetical protein VITISV_010510 [Vitis vinifera]
12 Hb_000320_330 0.0851027833 - - uncharacterized protein LOC100527884 [Glycine max]
13 Hb_002000_140 0.0872576316 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
14 Hb_001053_140 0.0883630905 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
15 Hb_007192_100 0.0890961363 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
16 Hb_138585_040 0.089196124 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
17 Hb_007441_260 0.0894363951 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
18 Hb_005278_040 0.0894714406 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
19 Hb_000302_280 0.0895412501 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
20 Hb_003291_020 0.0897264905 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000384_120 Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_000087_130 Hb_000087_130 Hb_072922_020--Hb_000087_130 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_003880_030--Hb_000922_040 Hb_000922_040--Hb_005269_080 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_002303_060 Hb_002303_060 Hb_005269_080--Hb_002303_060 Hb_005269_080--Hb_000254_050 Hb_001053_140 Hb_001053_140 Hb_005269_080--Hb_001053_140 Hb_005269_080--Hb_000701_100 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_005045_070 Hb_005045_070 Hb_002324_010--Hb_005045_070 Hb_001172_100 Hb_001172_100 Hb_002324_010--Hb_001172_100 Hb_002324_010--Hb_072922_020 Hb_138585_040 Hb_138585_040 Hb_002324_010--Hb_138585_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.82969 5.31991 8.52218 17.8079 4.24421 7.68412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.5174 41.8381 22.2864 12.4112 10.7805

CAGE analysis