Hb_001053_140

Information

Type -
Description -
Location Contig1053: 115633-119207
Sequence    

Annotation

kegg
ID pmum:103330470
description ATP synthase subunit O, mitochondrial
nr
ID XP_012065559.1
description PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
swissprot
ID P22778
description ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1
trembl
ID A0A067LH00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16756 PE=3 SV=1
Gene Ontology
ID GO:0005753
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01791: 115644-119283
cDNA
(Sanger)
(ID:Location)		 006_C20.ab1: 115996-119249 , 014_G21.ab1: 116347-119259 , 031_I19.ab1: 116376-119282 , 032_C12.ab1: 116376-119282 , 036_E09.ab1: 115946-119244 , 043_N06.ab1: 115974-119249 , 052_C03.ab1: 116377-119263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_140 0.0 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
2 Hb_001329_150 0.058890699 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
3 Hb_002303_060 0.0603934455 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000419_070 0.0712312818 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
5 Hb_010560_030 0.0722552678 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
6 Hb_000189_240 0.0737805455 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
7 Hb_005269_080 0.0746135569 - - protein with unknown function [Ricinus communis]
8 Hb_011485_020 0.0754570565 - - protein with unknown function [Ricinus communis]
9 Hb_000571_020 0.0827363544 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
10 Hb_072922_020 0.0867770001 - - SNARE-like superfamily protein [Theobroma cacao]
11 Hb_003880_030 0.0871589309 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_002000_140 0.0877744343 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
13 Hb_000384_120 0.0883630905 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
14 Hb_024074_010 0.0903635484 - - PREDICTED: cytochrome c [Jatropha curcas]
15 Hb_000087_130 0.0911397711 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
16 Hb_002016_080 0.0920062977 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
17 Hb_000922_040 0.0942582127 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
18 Hb_148209_010 0.0946806807 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_002314_010 0.0947921342 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
20 Hb_000739_140 0.09480202 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_140 Hb_001053_140 Hb_001329_150 Hb_001329_150 Hb_001053_140--Hb_001329_150 Hb_002303_060 Hb_002303_060 Hb_001053_140--Hb_002303_060 Hb_000419_070 Hb_000419_070 Hb_001053_140--Hb_000419_070 Hb_010560_030 Hb_010560_030 Hb_001053_140--Hb_010560_030 Hb_000189_240 Hb_000189_240 Hb_001053_140--Hb_000189_240 Hb_005269_080 Hb_005269_080 Hb_001053_140--Hb_005269_080 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_001329_150--Hb_002303_060 Hb_001329_150--Hb_000189_240 Hb_002303_060--Hb_005269_080 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_011485_020 Hb_011485_020 Hb_000419_070--Hb_011485_020 Hb_011512_040 Hb_011512_040 Hb_000419_070--Hb_011512_040 Hb_010883_050 Hb_010883_050 Hb_000419_070--Hb_010883_050 Hb_000419_070--Hb_002303_060 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130 Hb_000826_100 Hb_000826_100 Hb_000189_240--Hb_000826_100 Hb_026053_020 Hb_026053_020 Hb_000189_240--Hb_026053_020 Hb_000189_240--Hb_002000_140 Hb_000189_240--Hb_003605_160 Hb_008071_020 Hb_008071_020 Hb_000189_240--Hb_008071_020 Hb_000922_040 Hb_000922_040 Hb_005269_080--Hb_000922_040 Hb_000254_050 Hb_000254_050 Hb_005269_080--Hb_000254_050 Hb_000384_120 Hb_000384_120 Hb_005269_080--Hb_000384_120 Hb_000701_100 Hb_000701_100 Hb_005269_080--Hb_000701_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.1628 54.8519 147.367 219.026 49.6628 61.2394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
219.542 407.256 209.454 133.691 126.073

CAGE analysis