Hb_000327_380

Information

Type -
Description -
Location Contig327: 443022-447819
Sequence    

Annotation

kegg
ID rcu:RCOM_0000910
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID KDP46110.1
description hypothetical protein JCGZ_06621 [Jatropha curcas]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID A0A067LMQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06621 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34418: 443935-444749 , PASA_asmbl_34419: 445107-447163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_380 0.0 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
2 Hb_000009_290 0.075825443 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
3 Hb_000805_240 0.0810675154 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
4 Hb_010560_030 0.0852354898 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
5 Hb_000327_230 0.0898478493 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_003362_030 0.0917448396 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
7 Hb_000045_300 0.092379381 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
8 Hb_004052_050 0.092957467 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
9 Hb_000608_050 0.0937436298 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
10 Hb_002060_010 0.0970951676 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
11 Hb_002303_060 0.0980878107 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002045_070 0.0989798025 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
13 Hb_003502_060 0.0997204681 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
14 Hb_002301_160 0.1001848167 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
15 Hb_000701_100 0.1008315791 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
16 Hb_000161_130 0.1010096973 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
17 Hb_000571_020 0.1037524709 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]
18 Hb_008071_020 0.1042805322 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
19 Hb_000538_120 0.1044511722 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
20 Hb_000221_190 0.1050003485 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000327_380 Hb_000327_380 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_010560_030 Hb_010560_030 Hb_000327_380--Hb_010560_030 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_002301_160 Hb_002301_160 Hb_000009_290--Hb_002301_160 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_002045_070 Hb_002045_070 Hb_000009_290--Hb_002045_070 Hb_001410_060 Hb_001410_060 Hb_000009_290--Hb_001410_060 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130 Hb_001863_430 Hb_001863_430 Hb_000327_230--Hb_001863_430 Hb_000136_260 Hb_000136_260 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000099_150 Hb_000099_150 Hb_000327_230--Hb_000099_150 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_001016_150 Hb_001016_150 Hb_000327_230--Hb_001016_150 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_003362_030--Hb_008071_020 Hb_003362_030--Hb_021068_040 Hb_007943_050 Hb_007943_050 Hb_000045_300--Hb_007943_050 Hb_000045_300--Hb_000327_230 Hb_000733_200 Hb_000733_200 Hb_000045_300--Hb_000733_200 Hb_000045_300--Hb_003362_030 Hb_012565_070 Hb_012565_070 Hb_000045_300--Hb_012565_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58965 2.5524 2.9058 4.46937 1.08016 1.53087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65591 6.10428 3.33315 1.98996 1.73092

CAGE analysis