Hb_000099_150

Information

Type -
Description -
Location Contig99: 196284-201645
Sequence    

Annotation

kegg
ID rcu:RCOM_1689450
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_012086799.1
description PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
swissprot
ID Q42479
description Calcium-dependent protein kinase 3 OS=Arabidopsis thaliana GN=CPK3 PE=1 SV=1
trembl
ID A0A067K0N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20515 PE=4 SV=1
Gene Ontology
ID GO:0005773
description calcium-dependent protein kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64738: 196610-201160 , PASA_asmbl_64739: 201276-201737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000099_150 0.0 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
2 Hb_001691_140 0.0591455097 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
3 Hb_000136_260 0.0706082339 - - 40S ribosomal protein S5A [Hevea brasiliensis]
4 Hb_002027_350 0.0724580015 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
5 Hb_000327_230 0.0836527946 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_017987_050 0.0859045017 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
7 Hb_002078_140 0.0867169294 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
8 Hb_000270_310 0.087287211 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
9 Hb_003669_020 0.089995054 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
10 Hb_004324_090 0.0919958744 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
11 Hb_000221_190 0.0921087285 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
12 Hb_001030_020 0.0930544542 - - Poly(A) polymerase alpha, putative [Ricinus communis]
13 Hb_005365_030 0.0932625653 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
14 Hb_001278_100 0.0942742744 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
15 Hb_000419_020 0.0946921113 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_163256_020 0.0952020192 - - fructokinase [Manihot esculenta]
17 Hb_000310_020 0.0963421862 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
18 Hb_010423_030 0.0964891311 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
19 Hb_001341_150 0.0966517018 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
20 Hb_000739_300 0.0967383688 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]

Gene co-expression network

sample Hb_000099_150 Hb_000099_150 Hb_001691_140 Hb_001691_140 Hb_000099_150--Hb_001691_140 Hb_000136_260 Hb_000136_260 Hb_000099_150--Hb_000136_260 Hb_002027_350 Hb_002027_350 Hb_000099_150--Hb_002027_350 Hb_000327_230 Hb_000327_230 Hb_000099_150--Hb_000327_230 Hb_017987_050 Hb_017987_050 Hb_000099_150--Hb_017987_050 Hb_002078_140 Hb_002078_140 Hb_000099_150--Hb_002078_140 Hb_001691_140--Hb_002078_140 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001863_430 Hb_001863_430 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_000136_260--Hb_002078_140 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_000164_100 Hb_000164_100 Hb_002027_350--Hb_000164_100 Hb_011618_060 Hb_011618_060 Hb_002027_350--Hb_011618_060 Hb_003669_020 Hb_003669_020 Hb_002027_350--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_002027_350--Hb_002534_100 Hb_000010_190 Hb_000010_190 Hb_002027_350--Hb_000010_190 Hb_000327_230--Hb_001863_430 Hb_000327_230--Hb_000136_260 Hb_000001_060 Hb_000001_060 Hb_000327_230--Hb_000001_060 Hb_000005_090 Hb_000005_090 Hb_000327_230--Hb_000005_090 Hb_001016_150 Hb_001016_150 Hb_000327_230--Hb_001016_150 Hb_000161_130 Hb_000161_130 Hb_017987_050--Hb_000161_130 Hb_017987_050--Hb_000327_230 Hb_139294_010 Hb_139294_010 Hb_017987_050--Hb_139294_010 Hb_004324_090 Hb_004324_090 Hb_017987_050--Hb_004324_090 Hb_000310_020 Hb_000310_020 Hb_017987_050--Hb_000310_020 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6765 20.798 22.673 19.5575 11.0908 12.3788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1349 45.3211 17.5214 21.7258 12.5412

CAGE analysis