Hb_002078_140

Information

Type -
Description -
Location Contig2078: 86641-88940
Sequence    

Annotation

kegg
ID mtr:MTR_3g085510
description hypothetical protein
nr
ID XP_012085662.1
description PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
swissprot
ID Q944J0
description Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1
trembl
ID A0A067K3H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17948 PE=4 SV=1
Gene Ontology
ID GO:0005787
description probable signal peptidase complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21417: 86647-88897 , PASA_asmbl_21418: 86659-88866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_140 0.0 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
2 Hb_124953_020 0.0537349884 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
3 Hb_001691_140 0.0634056776 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
4 Hb_001341_150 0.0656162955 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
5 Hb_000136_260 0.0660194656 - - 40S ribosomal protein S5A [Hevea brasiliensis]
6 Hb_001016_150 0.066462921 - - Rop1 [Hevea brasiliensis]
7 Hb_001863_430 0.0677039745 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
8 Hb_000172_320 0.0681854856 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
9 Hb_001728_030 0.0716838717 - - 60S ribosomal protein L15 [Populus trichocarpa]
10 Hb_008554_060 0.0725297179 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
11 Hb_000431_170 0.0753208153 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
12 Hb_011671_100 0.0766646885 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_005365_030 0.0769824328 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
14 Hb_006693_020 0.077312405 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
15 Hb_000390_300 0.0775503169 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
16 Hb_005054_350 0.0784546702 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
17 Hb_003435_020 0.0792852013 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_002811_170 0.0818590577 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
19 Hb_000610_050 0.0819084597 - - skp1, putative [Ricinus communis]
20 Hb_002171_060 0.0822222676 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002078_140 Hb_002078_140 Hb_124953_020 Hb_124953_020 Hb_002078_140--Hb_124953_020 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_001016_150 Hb_001016_150 Hb_002078_140--Hb_001016_150 Hb_001863_430 Hb_001863_430 Hb_002078_140--Hb_001863_430 Hb_124953_020--Hb_001016_150 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001691_140--Hb_001863_430 Hb_029388_020 Hb_029388_020 Hb_001691_140--Hb_029388_020 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_000538_120 Hb_000538_120 Hb_000136_260--Hb_000538_120 Hb_000136_260--Hb_000099_150 Hb_000419_020 Hb_000419_020 Hb_000136_260--Hb_000419_020 Hb_000136_350 Hb_000136_350 Hb_000136_260--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_000136_260--Hb_004109_340 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_001863_430--Hb_000506_070 Hb_001863_430--Hb_002811_170 Hb_000327_230 Hb_000327_230 Hb_001863_430--Hb_000327_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.9758 21.5992 32.0699 34.5992 26.7551 27.3874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9156 74.1312 27.203 33.0101 15.2491

CAGE analysis