Hb_002192_010

Information

Type -
Description -
Location Contig2192: 20010-25105
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_010 0.0 - - -
2 Hb_007423_040 0.0759639291 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
3 Hb_124953_020 0.0827253713 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
4 Hb_002078_140 0.0862430297 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_005773_060 0.0884022458 - - defender against cell death, putative [Ricinus communis]
6 Hb_000610_050 0.0950948599 - - skp1, putative [Ricinus communis]
7 Hb_000172_640 0.0952206881 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
8 Hb_000465_390 0.0968171685 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
9 Hb_027472_040 0.0983961228 - - SKP1 [Hevea brasiliensis]
10 Hb_001016_150 0.0997129699 - - Rop1 [Hevea brasiliensis]
11 Hb_001341_150 0.100610311 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
12 Hb_007576_080 0.1010799113 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
13 Hb_000286_070 0.1012421187 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
14 Hb_002320_040 0.1018680809 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
15 Hb_000236_390 0.1023655565 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
16 Hb_000529_030 0.1035393542 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000562_030 0.1038035211 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008554_060 0.1039810467 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
19 Hb_002534_150 0.1053984407 - - catalytic, putative [Ricinus communis]
20 Hb_005365_030 0.1054771824 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]

Gene co-expression network

sample Hb_002192_010 Hb_002192_010 Hb_007423_040 Hb_007423_040 Hb_002192_010--Hb_007423_040 Hb_124953_020 Hb_124953_020 Hb_002192_010--Hb_124953_020 Hb_002078_140 Hb_002078_140 Hb_002192_010--Hb_002078_140 Hb_005773_060 Hb_005773_060 Hb_002192_010--Hb_005773_060 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_000172_640 Hb_000172_640 Hb_002192_010--Hb_000172_640 Hb_005730_120 Hb_005730_120 Hb_007423_040--Hb_005730_120 Hb_007576_080 Hb_007576_080 Hb_007423_040--Hb_007576_080 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_001691_140 Hb_001691_140 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430 Hb_002811_260 Hb_002811_260 Hb_005773_060--Hb_002811_260 Hb_003544_020 Hb_003544_020 Hb_005773_060--Hb_003544_020 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_005773_060--Hb_124953_020 Hb_024071_020 Hb_024071_020 Hb_000610_050--Hb_024071_020 Hb_000610_050--Hb_027472_040 Hb_002893_050 Hb_002893_050 Hb_000610_050--Hb_002893_050 Hb_007875_030 Hb_007875_030 Hb_000610_050--Hb_007875_030 Hb_000796_210 Hb_000796_210 Hb_000610_050--Hb_000796_210 Hb_000342_100 Hb_000342_100 Hb_000610_050--Hb_000342_100 Hb_000172_640--Hb_005365_030 Hb_000172_640--Hb_124953_020 Hb_000172_640--Hb_004800_060 Hb_000172_640--Hb_027472_040 Hb_000172_640--Hb_002078_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95326 1.70131 3.07293 2.6433 3.00544 1.87083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60464 5.14445 1.31189 2.65365 1.01665

CAGE analysis