Hb_005773_060

Information

Type -
Description -
Location Contig5773: 109875-115520
Sequence    

Annotation

kegg
ID rcu:RCOM_0534850
description defender against cell death, putative (EC:2.4.1.119)
nr
ID XP_002521538.1
description defender against cell death, putative [Ricinus communis]
swissprot
ID Q9ZWQ7
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1
trembl
ID B9S6B9
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Ricinus communis GN=RCOM_0534850 PE=3 SV=1
Gene Ontology
ID GO:0005789
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49708: 109913-115440
cDNA
(Sanger)
(ID:Location)		 050_A13.ab1: 109931-115424

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005773_060 0.0 - - defender against cell death, putative [Ricinus communis]
2 Hb_002811_260 0.0699433918 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
3 Hb_003544_020 0.069995471 - - PREDICTED: elongin-A [Jatropha curcas]
4 Hb_000562_030 0.0716195494 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002192_010 0.0884022458 - - -
6 Hb_000186_190 0.0895916717 - - PREDICTED: uncharacterized protein At4g22160 [Jatropha curcas]
7 Hb_124953_020 0.0907726598 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
8 Hb_001195_480 0.0932811097 - - cop9 complex subunit, putative [Ricinus communis]
9 Hb_007875_030 0.0953605241 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
10 Hb_001221_320 0.0955915612 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
11 Hb_003185_110 0.0962124902 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
12 Hb_000236_390 0.0969320403 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
13 Hb_000331_250 0.097043202 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
14 Hb_001454_400 0.1009164113 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
15 Hb_001534_120 0.102416219 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_002820_110 0.1045770331 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
17 Hb_007423_040 0.1047584676 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
18 Hb_000286_070 0.1050254088 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
19 Hb_002601_110 0.105236275 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
20 Hb_021419_020 0.1056899149 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005773_060 Hb_005773_060 Hb_002811_260 Hb_002811_260 Hb_005773_060--Hb_002811_260 Hb_003544_020 Hb_003544_020 Hb_005773_060--Hb_003544_020 Hb_000562_030 Hb_000562_030 Hb_005773_060--Hb_000562_030 Hb_002192_010 Hb_002192_010 Hb_005773_060--Hb_002192_010 Hb_000186_190 Hb_000186_190 Hb_005773_060--Hb_000186_190 Hb_124953_020 Hb_124953_020 Hb_005773_060--Hb_124953_020 Hb_021419_020 Hb_021419_020 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_001221_320 Hb_001221_320 Hb_003544_020--Hb_001221_320 Hb_003544_020--Hb_000186_190 Hb_003544_020--Hb_002811_260 Hb_008686_080 Hb_008686_080 Hb_003544_020--Hb_008686_080 Hb_001814_070 Hb_001814_070 Hb_003544_020--Hb_001814_070 Hb_000562_030--Hb_002811_260 Hb_000160_060 Hb_000160_060 Hb_000562_030--Hb_000160_060 Hb_000359_150 Hb_000359_150 Hb_000562_030--Hb_000359_150 Hb_000562_030--Hb_003544_020 Hb_000690_190 Hb_000690_190 Hb_000562_030--Hb_000690_190 Hb_007423_040 Hb_007423_040 Hb_002192_010--Hb_007423_040 Hb_002192_010--Hb_124953_020 Hb_002078_140 Hb_002078_140 Hb_002192_010--Hb_002078_140 Hb_000610_050 Hb_000610_050 Hb_002192_010--Hb_000610_050 Hb_000172_640 Hb_000172_640 Hb_002192_010--Hb_000172_640 Hb_002289_120 Hb_002289_120 Hb_000186_190--Hb_002289_120 Hb_003878_010 Hb_003878_010 Hb_000186_190--Hb_003878_010 Hb_000186_190--Hb_002811_260 Hb_001817_090 Hb_001817_090 Hb_000186_190--Hb_001817_090 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.9073 23.3876 65.5107 50.133 46.0746 40.746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.1795 90.6272 27.0139 35.5932 11.2864

CAGE analysis