Hb_004800_060

Information

Type -
Description -
Location Contig4800: 54985-58841
Sequence    

Annotation

kegg
ID pxb:103947497
description uncharacterized LOC103947497
nr
ID XP_012084470.1
description PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20030 PE=4 SV=1
Gene Ontology
ID GO:0016021
description aldehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44684: 54829-60335
cDNA
(Sanger)
(ID:Location)		 032_P16.ab1: 59353-60335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_060 0.0 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
2 Hb_124953_020 0.0746611676 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
3 Hb_004162_210 0.0841131956 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
4 Hb_003106_220 0.0885829382 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
5 Hb_001016_150 0.0949467849 - - Rop1 [Hevea brasiliensis]
6 Hb_000172_640 0.0951477736 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
7 Hb_126861_010 0.1006205881 - - hypothetical protein M569_05914, partial [Genlisea aurea]
8 Hb_001863_430 0.1035480173 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
9 Hb_002078_140 0.104212363 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
10 Hb_007875_030 0.1045888436 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
11 Hb_153544_010 0.1062407345 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
12 Hb_002192_010 0.1063538065 - - -
13 Hb_000506_070 0.1073467187 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
14 Hb_003018_020 0.109304151 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
15 Hb_000923_090 0.1123169486 - - -
16 Hb_005365_030 0.1154483181 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
17 Hb_000331_470 0.1174040123 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
18 Hb_000465_390 0.1184779212 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
19 Hb_000610_050 0.1192456694 - - skp1, putative [Ricinus communis]
20 Hb_005773_060 0.120554845 - - defender against cell death, putative [Ricinus communis]

Gene co-expression network

sample Hb_004800_060 Hb_004800_060 Hb_124953_020 Hb_124953_020 Hb_004800_060--Hb_124953_020 Hb_004162_210 Hb_004162_210 Hb_004800_060--Hb_004162_210 Hb_003106_220 Hb_003106_220 Hb_004800_060--Hb_003106_220 Hb_001016_150 Hb_001016_150 Hb_004800_060--Hb_001016_150 Hb_000172_640 Hb_000172_640 Hb_004800_060--Hb_000172_640 Hb_126861_010 Hb_126861_010 Hb_004800_060--Hb_126861_010 Hb_124953_020--Hb_001016_150 Hb_002078_140 Hb_002078_140 Hb_124953_020--Hb_002078_140 Hb_005365_030 Hb_005365_030 Hb_124953_020--Hb_005365_030 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_001047_240 Hb_001047_240 Hb_004162_210--Hb_001047_240 Hb_007875_030 Hb_007875_030 Hb_004162_210--Hb_007875_030 Hb_153544_010 Hb_153544_010 Hb_004162_210--Hb_153544_010 Hb_004162_210--Hb_124953_020 Hb_006915_040 Hb_006915_040 Hb_004162_210--Hb_006915_040 Hb_003106_220--Hb_002192_010 Hb_062226_140 Hb_062226_140 Hb_003106_220--Hb_062226_140 Hb_003106_220--Hb_004162_210 Hb_000676_140 Hb_000676_140 Hb_003106_220--Hb_000676_140 Hb_003106_220--Hb_001016_150 Hb_001016_150--Hb_001863_430 Hb_001016_150--Hb_002078_140 Hb_001341_150 Hb_001341_150 Hb_001016_150--Hb_001341_150 Hb_002811_170 Hb_002811_170 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_000172_640--Hb_005365_030 Hb_000172_640--Hb_124953_020 Hb_000172_640--Hb_002192_010 Hb_027472_040 Hb_027472_040 Hb_000172_640--Hb_027472_040 Hb_000172_640--Hb_002078_140 Hb_003185_110 Hb_003185_110 Hb_126861_010--Hb_003185_110 Hb_126861_010--Hb_153544_010 Hb_001141_140 Hb_001141_140 Hb_126861_010--Hb_001141_140 Hb_139294_020 Hb_139294_020 Hb_126861_010--Hb_139294_020 Hb_003018_020 Hb_003018_020 Hb_126861_010--Hb_003018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95009 4.02952 6.83359 9.33643 4.84008 4.74292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.963 18.2651 4.05534 8.99706 1.79533

CAGE analysis