Hb_153544_010

Information

Type -
Description -
Location Contig153544: 5477-10583
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11460g
description POPTRDRAFT_564483; hypothetical protein
nr
ID XP_011021544.1
description PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
swissprot
ID Q5EA37
description Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1
trembl
ID B9HIY1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13207: 9624-10611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153544_010 0.0 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
2 Hb_004871_020 0.0691499893 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
3 Hb_000030_290 0.0792042572 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
4 Hb_000317_070 0.0795206676 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
5 Hb_000417_360 0.0830686761 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
6 Hb_091433_020 0.0859735664 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_143496_010 0.0864342158 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
8 Hb_010175_040 0.0877695655 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
9 Hb_001616_040 0.0891134904 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
10 Hb_000331_470 0.0910949639 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
11 Hb_000525_020 0.0944042702 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_003018_020 0.0949862946 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
13 Hb_003226_100 0.0952321351 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
14 Hb_126861_010 0.0979664198 - - hypothetical protein M569_05914, partial [Genlisea aurea]
15 Hb_007441_300 0.0984427123 - - ATP binding protein, putative [Ricinus communis]
16 Hb_017491_060 0.0985387493 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
17 Hb_000506_070 0.0989388601 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
18 Hb_004162_210 0.0992456469 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
19 Hb_000356_090 0.1000937306 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
20 Hb_116608_010 0.1006437988 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_153544_010 Hb_153544_010 Hb_004871_020 Hb_004871_020 Hb_153544_010--Hb_004871_020 Hb_000030_290 Hb_000030_290 Hb_153544_010--Hb_000030_290 Hb_000317_070 Hb_000317_070 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_004871_020--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_009711_020 Hb_009711_020 Hb_004871_020--Hb_009711_020 Hb_004871_020--Hb_000030_290 Hb_000030_290--Hb_009711_020 Hb_001616_040 Hb_001616_040 Hb_000030_290--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_002609_210 Hb_002609_210 Hb_000030_290--Hb_002609_210 Hb_000317_070--Hb_007441_300 Hb_174865_010 Hb_174865_010 Hb_000317_070--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000317_070--Hb_000735_040 Hb_000093_110 Hb_000093_110 Hb_000317_070--Hb_000093_110 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_000417_360--Hb_091433_020 Hb_000920_110 Hb_000920_110 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_001085_120 Hb_001085_120 Hb_000417_360--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_000417_360--Hb_000261_140 Hb_033642_080 Hb_033642_080 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_143496_010--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_143496_010--Hb_003226_100 Hb_017491_060 Hb_017491_060 Hb_143496_010--Hb_017491_060 Hb_001141_140 Hb_001141_140 Hb_143496_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_143496_010--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_143496_010--Hb_000699_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24447 6.05223 7.94617 10.0976 6.41306 5.77514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2891 28.2654 9.83825 9.68691 3.86395

CAGE analysis