Hb_009711_020

Information

Type -
Description -
Location Contig9711: 11496-15343
Sequence    

Annotation

kegg
ID rcu:RCOM_1122740
description hypothetical protein
nr
ID XP_012089415.1
description PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SHK7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1122740 PE=4 SV=1
Gene Ontology
ID GO:0009536
description at1g08530-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63952: 11502-15325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009711_020 0.0 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
2 Hb_000030_290 0.04919048 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
3 Hb_002609_210 0.0582238432 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
4 Hb_001616_040 0.0644111652 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
5 Hb_000334_210 0.0766422109 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
6 Hb_002477_140 0.0775620538 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
7 Hb_004871_020 0.0858009964 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
8 Hb_001476_080 0.0889668546 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
9 Hb_003226_100 0.0912019406 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
10 Hb_000680_140 0.0915722902 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
11 Hb_006541_010 0.0921173198 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
12 Hb_003581_100 0.0931026802 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
13 Hb_005736_060 0.0945296694 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_005211_190 0.0947009153 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
15 Hb_000307_090 0.0949729985 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
16 Hb_001016_030 0.0978696102 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
17 Hb_003683_110 0.0981028755 - - JHL10I11.3 [Jatropha curcas]
18 Hb_007576_170 0.0989822032 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003125_190 0.1000428647 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
20 Hb_000342_100 0.1007751558 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009711_020 Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_004871_020 Hb_004871_020 Hb_009711_020--Hb_004871_020 Hb_000030_290--Hb_001616_040 Hb_153544_010 Hb_153544_010 Hb_000030_290--Hb_153544_010 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_000030_290--Hb_002609_210 Hb_005211_190 Hb_005211_190 Hb_002609_210--Hb_005211_190 Hb_009421_040 Hb_009421_040 Hb_002609_210--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_002609_210--Hb_000680_140 Hb_002609_210--Hb_000334_210 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_006541_010 Hb_006541_010 Hb_001616_040--Hb_006541_010 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_000111_340 Hb_000111_340 Hb_000334_210--Hb_000111_340 Hb_003656_070 Hb_003656_070 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_000334_210--Hb_001616_040 Hb_000307_090 Hb_000307_090 Hb_002477_140--Hb_000307_090 Hb_005736_060 Hb_005736_060 Hb_002477_140--Hb_005736_060 Hb_002477_140--Hb_000334_210 Hb_002477_140--Hb_000030_290 Hb_003599_040 Hb_003599_040 Hb_002477_140--Hb_003599_040 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_004871_020--Hb_153544_010 Hb_007441_300 Hb_007441_300 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_004871_020--Hb_000030_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.71417 6.80437 8.74867 7.47763 8.0709 11.3707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5109 29.9129 10.3161 8.44334 8.35711

CAGE analysis