Hb_000680_140

Information

Type -
Description -
Location Contig680: 156780-160691
Sequence    

Annotation

kegg
ID rcu:RCOM_0312560
description RNA binding protein, putative
nr
ID XP_012068992.1
description PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
swissprot
ID P74327
description Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3 SV=1
trembl
ID A0A067KXD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24776 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53757: 156815-160782 , PASA_asmbl_53758: 159640-159828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_140 0.0 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
2 Hb_004459_040 0.0633263594 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
3 Hb_153112_030 0.063468232 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
4 Hb_007576_170 0.0709340052 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006541_010 0.0772123067 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
6 Hb_001616_040 0.0775675762 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
7 Hb_000668_040 0.0775873382 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
8 Hb_001396_100 0.0778215126 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001083_020 0.0796448513 - - -
10 Hb_017948_010 0.080202349 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
11 Hb_000173_220 0.0818959163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
12 Hb_000201_120 0.0823402426 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
13 Hb_000334_210 0.0825464119 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
14 Hb_000340_570 0.082721471 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
15 Hb_000181_300 0.0834619683 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
16 Hb_033153_060 0.0838048589 - - Transcription elongation factor, putative [Ricinus communis]
17 Hb_002676_090 0.0841264816 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
18 Hb_001191_090 0.0847790768 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_003349_080 0.0852765164 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
20 Hb_005211_190 0.0853327642 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_140 Hb_000680_140 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_004459_040--Hb_007576_170 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_017948_010 Hb_017948_010 Hb_153112_030--Hb_017948_010 Hb_001633_030 Hb_001633_030 Hb_153112_030--Hb_001633_030 Hb_000173_220 Hb_000173_220 Hb_153112_030--Hb_000173_220 Hb_153112_030--Hb_004459_040 Hb_000181_300 Hb_000181_300 Hb_153112_030--Hb_000181_300 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_007576_170--Hb_033153_060 Hb_007576_170--Hb_006541_010 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_006541_010--Hb_033153_060 Hb_006541_010--Hb_001616_040 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_000201_120 Hb_000201_120 Hb_000668_040--Hb_000201_120 Hb_001832_010 Hb_001832_010 Hb_000668_040--Hb_001832_010 Hb_001396_100 Hb_001396_100 Hb_000668_040--Hb_001396_100 Hb_002016_100 Hb_002016_100 Hb_000668_040--Hb_002016_100 Hb_010080_090 Hb_010080_090 Hb_000668_040--Hb_010080_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0595 7.61075 10.9182 10.3138 10.8766 16.1617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.1979 44.0177 26.7618 11.0875 15.0691

CAGE analysis