Hb_000224_140

Information

Type -
Description -
Location Contig224: 86758-90131
Sequence    

Annotation

kegg
ID rcu:RCOM_0511120
description ribonuclease z, chloroplast, putative (EC:3.1.26.11)
nr
ID XP_002528949.1
description ribonuclease z, chloroplast, putative [Ricinus communis]
swissprot
ID Q8L633
description Ribonuclease Z, chloroplastic OS=Arabidopsis thaliana GN=CPZ PE=2 SV=1
trembl
ID B9SSI0
description Ribonuclease z, chloroplast, putative OS=Ricinus communis GN=RCOM_0511120 PE=4 SV=1
Gene Ontology
ID GO:0042781
description ribonuclease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23295: 86859-90103 , PASA_asmbl_23296: 87264-90114
cDNA
(Sanger)
(ID:Location)		 009_O01.ab1: 86861-88211

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000224_140 0.0 - - ribonuclease z, chloroplast, putative [Ricinus communis]
2 Hb_068056_030 0.0565193222 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
3 Hb_001512_080 0.0567481211 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
4 Hb_001076_020 0.0624792856 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
5 Hb_003349_080 0.0627905508 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
6 Hb_000318_160 0.0643364634 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
7 Hb_005463_140 0.0692122521 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
8 Hb_004459_040 0.0697978758 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
9 Hb_027654_050 0.0762565348 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
10 Hb_003050_280 0.078879372 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_002918_290 0.0790521626 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
12 Hb_000181_300 0.079252526 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
13 Hb_001776_160 0.079402934 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
14 Hb_001085_120 0.082581816 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
15 Hb_002742_090 0.0839148322 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
16 Hb_001314_040 0.0850577634 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
17 Hb_033153_060 0.0858877463 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_001218_040 0.0867063869 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
19 Hb_000680_140 0.0867586469 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
20 Hb_072922_020 0.0870009562 - - SNARE-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000224_140 Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_068056_030--Hb_001512_080 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001085_120 Hb_001085_120 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_003326_020 Hb_003326_020 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300 Hb_003349_080--Hb_000318_160 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_003349_080--Hb_002918_290 Hb_000318_160--Hb_003050_280 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55113 3.02656 7.47903 8.88585 5.70907 7.00318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1367 32.1649 20.5344 8.57622 10.5562

CAGE analysis