Hb_006569_100

Information

Type -
Description -
Location Contig6569: 129700-132324
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26990g
description POPTRDRAFT_831704; hypothetical protein
nr
ID XP_002306968.1
description hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
swissprot
ID Q8LDK3
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana GN=At1g76200 PE=3 SV=1
trembl
ID B9H5F0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26990g PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52777: 129711-132340
cDNA
(Sanger)
(ID:Location)		 004_M09.ab1: 129711-132122 , 010_G09.ab1: 129711-132193 , 012_E21.ab1: 129711-132178 , 016_F22.ab1: 129711-132178

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_100 0.0 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
2 Hb_001314_040 0.0581189325 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
3 Hb_020419_020 0.0665238838 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_068056_030 0.0707243409 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
5 Hb_001519_030 0.0713880243 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
6 Hb_000069_550 0.0756527482 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
7 Hb_001008_090 0.0774611074 - - cytochrome C oxidase, putative [Ricinus communis]
8 Hb_005527_040 0.0829118943 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
9 Hb_001157_010 0.0842271533 - - deoxyhypusine synthase, putative [Ricinus communis]
10 Hb_000417_260 0.0874743278 - - protein with unknown function [Ricinus communis]
11 Hb_027073_050 0.0882565992 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
12 Hb_004449_200 0.0884791958 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
13 Hb_001191_090 0.0889571328 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
14 Hb_000181_300 0.0895272561 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
15 Hb_002742_090 0.0897516474 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
16 Hb_000224_140 0.0919040981 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_000817_030 0.0929178 - - mak, putative [Ricinus communis]
18 Hb_006573_220 0.0940527712 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
19 Hb_007317_160 0.0944151054 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
20 Hb_005278_040 0.0953274653 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_006569_100 Hb_006569_100 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_001519_030 Hb_001519_030 Hb_006569_100--Hb_001519_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_001314_040--Hb_020419_020 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_001314_040--Hb_068056_030 Hb_020419_020--Hb_001008_090 Hb_004449_200 Hb_004449_200 Hb_020419_020--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_020419_020--Hb_005663_120 Hb_020419_020--Hb_068056_030 Hb_068056_030--Hb_000224_140 Hb_002918_290 Hb_002918_290 Hb_068056_030--Hb_002918_290 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_007594_120 Hb_007594_120 Hb_000069_550--Hb_007594_120 Hb_002603_150 Hb_002603_150 Hb_000069_550--Hb_002603_150 Hb_002876_120 Hb_002876_120 Hb_000069_550--Hb_002876_120 Hb_017948_010 Hb_017948_010 Hb_000069_550--Hb_017948_010 Hb_001191_090 Hb_001191_090 Hb_000069_550--Hb_001191_090 Hb_005278_040 Hb_005278_040 Hb_001008_090--Hb_005278_040 Hb_001008_090--Hb_000417_260 Hb_004659_060 Hb_004659_060 Hb_001008_090--Hb_004659_060 Hb_000300_220 Hb_000300_220 Hb_001008_090--Hb_000300_220 Hb_183961_010 Hb_183961_010 Hb_001008_090--Hb_183961_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.004 39.4612 102.028 192.359 100.722 115.322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
380.693 481.445 455.115 124.716 99.1423

CAGE analysis