Hb_005527_040

Information

Type -
Description -
Location Contig5527: 28655-31968
Sequence    

Annotation

kegg
ID rcu:RCOM_1614500
description dtdp-4-dehydrorhamnose dehydrogenase, putative (EC:1.1.1.133)
nr
ID XP_012083447.1
description PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
swissprot
ID Q5R4E0
description Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii GN=MAT2B PE=2 SV=1
trembl
ID A0A067JXQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14438 PE=4 SV=1
Gene Ontology
ID GO:0008831
description methionine adenosyltransferase 2 subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48313: 28693-31941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005527_040 0.0 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
2 Hb_001519_030 0.0797919174 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
3 Hb_006569_100 0.0829118943 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
4 Hb_001005_080 0.0860599558 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_004449_200 0.0865321139 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
6 Hb_005663_120 0.0885649823 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
7 Hb_000122_020 0.0938448196 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
8 Hb_050806_010 0.0939309553 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
9 Hb_001008_090 0.0959934211 - - cytochrome C oxidase, putative [Ricinus communis]
10 Hb_012539_020 0.0965376001 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
11 Hb_007317_160 0.0980336021 - - PREDICTED: uncharacterized protein At2g27730, mitochondrial [Jatropha curcas]
12 Hb_029904_040 0.1000228969 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
13 Hb_000389_080 0.1038961873 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_005463_140 0.1050518551 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
15 Hb_000417_260 0.1055481465 - - protein with unknown function [Ricinus communis]
16 Hb_005278_040 0.107037613 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
17 Hb_001314_040 0.1077665698 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
18 Hb_020419_020 0.1111033846 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_004659_060 0.1132808911 - - RAS-related GTP-binding family protein [Populus trichocarpa]
20 Hb_000069_550 0.1136653715 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_005527_040 Hb_005527_040 Hb_001519_030 Hb_001519_030 Hb_005527_040--Hb_001519_030 Hb_006569_100 Hb_006569_100 Hb_005527_040--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_005527_040--Hb_001005_080 Hb_004449_200 Hb_004449_200 Hb_005527_040--Hb_004449_200 Hb_005663_120 Hb_005663_120 Hb_005527_040--Hb_005663_120 Hb_000122_020 Hb_000122_020 Hb_005527_040--Hb_000122_020 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_001519_030--Hb_006569_100 Hb_001519_030--Hb_001005_080 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_001314_040 Hb_001314_040 Hb_006569_100--Hb_001314_040 Hb_020419_020 Hb_020419_020 Hb_006569_100--Hb_020419_020 Hb_068056_030 Hb_068056_030 Hb_006569_100--Hb_068056_030 Hb_000069_550 Hb_000069_550 Hb_006569_100--Hb_000069_550 Hb_001008_090 Hb_001008_090 Hb_006569_100--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001005_080--Hb_001481_140 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_004449_200--Hb_000122_020 Hb_002631_020 Hb_002631_020 Hb_004449_200--Hb_002631_020 Hb_007926_060 Hb_007926_060 Hb_004449_200--Hb_007926_060 Hb_001191_090 Hb_001191_090 Hb_004449_200--Hb_001191_090 Hb_000364_030 Hb_000364_030 Hb_004449_200--Hb_000364_030 Hb_001461_010 Hb_001461_010 Hb_004449_200--Hb_001461_010 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_000122_020--Hb_002631_020 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_003018_050 Hb_003018_050 Hb_000122_020--Hb_003018_050 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25139 1.42597 2.96978 10.171 3.84557 5.07139
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2332 22.4799 19.9466 7.82832 4.30852

CAGE analysis