Hb_001904_090

Information

Type -
Description -
Location Contig1904: 136639-141849
Sequence    

Annotation

kegg
ID egr:104433771
description mitochondrial dicarboxylate/tricarboxylate transporter DTC
nr
ID XP_012067077.1
description PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
swissprot
ID Q9C5M0
description Mitochondrial dicarboxylate/tricarboxylate transporter DTC OS=Arabidopsis thaliana GN=DTC PE=1 SV=1
trembl
ID A0A067LC67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01873 PE=3 SV=1
Gene Ontology
ID GO:0005618
description mitochondrial dicarboxylate tricarboxylate transporter dtc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18990: 136741-141889 , PASA_asmbl_18991: 137852-138014 , PASA_asmbl_18992: 139399-139515
cDNA
(Sanger)
(ID:Location)		 007_D22.ab1: 137360-141877 , 009_J22.ab1: 137377-141877 , 027_E23.ab1: 137435-141877 , 037_A13.ab1: 138853-141889 , 044_O08.ab1: 137450-141877

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001904_090 0.0 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
2 Hb_001396_100 0.0634389309 - - DNA binding protein, putative [Ricinus communis]
3 Hb_027654_050 0.0721642924 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
4 Hb_001519_030 0.0837081586 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
5 Hb_000123_170 0.0856236277 - - Rab3 [Hevea brasiliensis]
6 Hb_006831_120 0.0888559494 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
7 Hb_008616_070 0.0891481906 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]
8 Hb_001218_040 0.089686006 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
9 Hb_027073_050 0.0902840453 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
10 Hb_000140_050 0.0908648628 - - PREDICTED: sphingoid long-chain bases kinase 2, mitochondrial [Jatropha curcas]
11 Hb_000635_150 0.0942489225 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
12 Hb_001360_050 0.0956045228 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
13 Hb_017225_020 0.0973396739 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
14 Hb_001776_160 0.0976386807 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
15 Hb_028872_080 0.0977738344 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
16 Hb_000668_040 0.0981510528 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
17 Hb_004672_010 0.0984758751 - - ecotropic viral integration site, putative [Ricinus communis]
18 Hb_001461_010 0.0987520518 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
19 Hb_004668_020 0.0992010812 - - PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
20 Hb_001519_050 0.0994112719 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]

Gene co-expression network

sample Hb_001904_090 Hb_001904_090 Hb_001396_100 Hb_001396_100 Hb_001904_090--Hb_001396_100 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_000123_170 Hb_000123_170 Hb_001904_090--Hb_000123_170 Hb_006831_120 Hb_006831_120 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_001396_100--Hb_006831_120 Hb_001776_160 Hb_001776_160 Hb_027654_050--Hb_001776_160 Hb_017225_020 Hb_017225_020 Hb_027654_050--Hb_017225_020 Hb_001512_080 Hb_001512_080 Hb_027654_050--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_027654_050--Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_027654_050--Hb_000254_050 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_020400_050 Hb_020400_050 Hb_000123_170--Hb_020400_050 Hb_000123_170--Hb_001396_100 Hb_000125_190 Hb_000125_190 Hb_000123_170--Hb_000125_190 Hb_000025_120 Hb_000025_120 Hb_000123_170--Hb_000025_120 Hb_000668_040 Hb_000668_040 Hb_000123_170--Hb_000668_040 Hb_006831_120--Hb_001776_160 Hb_000103_320 Hb_000103_320 Hb_006831_120--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_006831_120--Hb_000638_250 Hb_000340_570 Hb_000340_570 Hb_006831_120--Hb_000340_570 Hb_028872_080 Hb_028872_080 Hb_006831_120--Hb_028872_080 Hb_000140_050 Hb_000140_050 Hb_006831_120--Hb_000140_050 Hb_001507_040 Hb_001507_040 Hb_008616_070--Hb_001507_040 Hb_002660_070 Hb_002660_070 Hb_008616_070--Hb_002660_070 Hb_020805_130 Hb_020805_130 Hb_008616_070--Hb_020805_130 Hb_004705_120 Hb_004705_120 Hb_008616_070--Hb_004705_120 Hb_015778_010 Hb_015778_010 Hb_008616_070--Hb_015778_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4716 14.9282 32.5995 44.598 29.1835 43.4171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.535 83.5119 99.4992 44.8484 40.4893

CAGE analysis