Hb_000123_170

Information

Type -
Description -
Location Contig123: 126871-131886
Sequence    

Annotation

kegg
ID vvi:100252992
description ras-related protein RABE1c
nr
ID AEA92307.1
description Rab3 [Hevea brasiliensis]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID F2VXU5
description Rab3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein rabe1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06964: 126847-131792 , PASA_asmbl_06965: 126815-131767 , PASA_asmbl_06966: 126788-131787 , PASA_asmbl_06968: 129909-130056
cDNA
(Sanger)
(ID:Location)		 003_K06.ab1: 126990-131792 , 005_C02.ab1: 127335-131767 , 037_K15.ab1: 127094-131808 , 045_K02.ab1: 127125-131808

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_170 0.0 - - Rab3 [Hevea brasiliensis]
2 Hb_020400_050 0.0769036362 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
3 Hb_001396_100 0.0782288383 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000125_190 0.0826964969 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
5 Hb_000025_120 0.0838492554 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
6 Hb_001904_090 0.0856236277 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
7 Hb_000668_040 0.087065243 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
8 Hb_002016_100 0.0893137306 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
9 Hb_001833_110 0.0930257541 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000635_150 0.0936298258 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
11 Hb_010042_010 0.0951449413 - - Urease accessory protein ureD, putative [Ricinus communis]
12 Hb_001519_050 0.0960866177 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
13 Hb_001191_090 0.0960886271 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
14 Hb_001519_030 0.0974372003 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
15 Hb_000364_030 0.0977479295 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000496_060 0.0989737851 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
17 Hb_065525_020 0.1024476546 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
18 Hb_009113_050 0.1024979996 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
19 Hb_001105_070 0.1026780626 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
20 Hb_143766_010 0.103817195 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]

Gene co-expression network

sample Hb_000123_170 Hb_000123_170 Hb_020400_050 Hb_020400_050 Hb_000123_170--Hb_020400_050 Hb_001396_100 Hb_001396_100 Hb_000123_170--Hb_001396_100 Hb_000125_190 Hb_000125_190 Hb_000123_170--Hb_000125_190 Hb_000025_120 Hb_000025_120 Hb_000123_170--Hb_000025_120 Hb_001904_090 Hb_001904_090 Hb_000123_170--Hb_001904_090 Hb_000668_040 Hb_000668_040 Hb_000123_170--Hb_000668_040 Hb_020400_050--Hb_000125_190 Hb_002016_100 Hb_002016_100 Hb_020400_050--Hb_002016_100 Hb_020400_050--Hb_000025_120 Hb_002061_040 Hb_002061_040 Hb_020400_050--Hb_002061_040 Hb_012053_070 Hb_012053_070 Hb_020400_050--Hb_012053_070 Hb_001396_100--Hb_001904_090 Hb_001191_090 Hb_001191_090 Hb_001396_100--Hb_001191_090 Hb_029866_020 Hb_029866_020 Hb_001396_100--Hb_029866_020 Hb_000240_090 Hb_000240_090 Hb_001396_100--Hb_000240_090 Hb_000181_300 Hb_000181_300 Hb_001396_100--Hb_000181_300 Hb_006831_120 Hb_006831_120 Hb_001396_100--Hb_006831_120 Hb_001519_050 Hb_001519_050 Hb_000125_190--Hb_001519_050 Hb_000635_150 Hb_000635_150 Hb_000125_190--Hb_000635_150 Hb_000125_190--Hb_002061_040 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000146_020 Hb_000146_020 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_027654_050 Hb_027654_050 Hb_001904_090--Hb_027654_050 Hb_001519_030 Hb_001519_030 Hb_001904_090--Hb_001519_030 Hb_001904_090--Hb_006831_120 Hb_008616_070 Hb_008616_070 Hb_001904_090--Hb_008616_070 Hb_000201_120 Hb_000201_120 Hb_000668_040--Hb_000201_120 Hb_001832_010 Hb_001832_010 Hb_000668_040--Hb_001832_010 Hb_000680_140 Hb_000680_140 Hb_000668_040--Hb_000680_140 Hb_000668_040--Hb_001396_100 Hb_000668_040--Hb_002016_100 Hb_010080_090 Hb_010080_090 Hb_000668_040--Hb_010080_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.1866 33.076 41.3541 76.045 39.5733 76.4198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
223.359 144.271 132.15 66.827 44.5517

CAGE analysis