Hb_000347_410

Information

Type -
Description -
Location Contig347: 416422-418508
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16840g
description POPTRDRAFT_709525; TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT
nr
ID XP_012068877.1
description PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
swissprot
ID Q9SYH2
description Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana GN=TAF9 PE=1 SV=1
trembl
ID A0A067KWX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24695 PE=4 SV=1
Gene Ontology
ID GO:0003743
description transcription initiation factor tfiid subunit 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36241: 416447-418507
cDNA
(Sanger)
(ID:Location)		 022_D19.ab1: 416588-418504

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_410 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
2 Hb_000146_020 0.050105788 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
3 Hb_029866_020 0.0616886842 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
4 Hb_000025_120 0.0655737443 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
5 Hb_003376_030 0.0660043549 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
6 Hb_004586_320 0.0710695617 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
7 Hb_000240_090 0.071116801 - - Rab5 [Hevea brasiliensis]
8 Hb_012675_060 0.0723726146 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
9 Hb_001191_090 0.0747469873 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
10 Hb_004724_340 0.0754927861 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
11 Hb_000368_010 0.0758128935 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
12 Hb_007943_090 0.0762189174 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
13 Hb_000173_220 0.0767544864 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
14 Hb_002027_210 0.0768401895 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
15 Hb_000009_160 0.0772216486 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
16 Hb_000574_480 0.078306527 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
17 Hb_000834_270 0.0803590526 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
18 Hb_000111_330 0.0804514947 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
19 Hb_148200_010 0.0809375867 - - hypothetical protein 33 [Hevea brasiliensis]
20 Hb_001396_100 0.081037679 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000347_410 Hb_000347_410 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_029866_020 Hb_029866_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_003376_030 Hb_003376_030 Hb_000347_410--Hb_003376_030 Hb_004586_320 Hb_004586_320 Hb_000347_410--Hb_004586_320 Hb_000240_090 Hb_000240_090 Hb_000347_410--Hb_000240_090 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_000146_020--Hb_003376_030 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060 Hb_001396_100 Hb_001396_100 Hb_029866_020--Hb_001396_100 Hb_029866_020--Hb_000240_090 Hb_005731_170 Hb_005731_170 Hb_029866_020--Hb_005731_170 Hb_011953_020 Hb_011953_020 Hb_029866_020--Hb_011953_020 Hb_029866_020--Hb_007943_090 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000025_120--Hb_000146_020 Hb_000025_120--Hb_000834_270 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_002097_060 Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_003376_030--Hb_002027_210 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_004586_320--Hb_148200_010 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.9374 36.166 25.1084 37.7156 48.6204 50.6621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.137 135.965 123.881 43.1902 26.0466

CAGE analysis