Hb_014720_080

Information

Type -
Description -
Location Contig14720: 116870-118986
Sequence    

Annotation

kegg
ID rcu:RCOM_1510480
description nitrogen fixation protein nifu, putative
nr
ID ADM67612.1
description iron-sulfur cluster scaffold protein [Hevea brasiliensis]
swissprot
ID O49627
description Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana GN=ISU1 PE=2 SV=1
trembl
ID I6LM37
description Iron-sulfur cluster scaffold protein OS=Hevea brasiliensis GN=ISU1 PE=2 SV=1
Gene Ontology
ID GO:0005506
description iron-sulfur cluster assembly protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11962: 117141-118973
cDNA
(Sanger)
(ID:Location)		 007_C12.ab1: 117270-118978 , 007_J21.ab1: 117271-118932 , 022_A02.ab1: 117330-118971 , 037_B13.ab1: 117296-118966 , 045_K22.ab1: 117271-118932

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_080 0.0 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
2 Hb_001722_100 0.057652929 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000025_120 0.062676287 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
4 Hb_021650_030 0.0671514756 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
5 Hb_002540_030 0.067559267 - - hypothetical protein 32 [Hevea brasiliensis]
6 Hb_000146_020 0.0688364537 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
7 Hb_000834_270 0.0711948332 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
8 Hb_002411_200 0.0735812231 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010172_070 0.0761162282 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
10 Hb_000496_060 0.0825189809 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
11 Hb_000922_270 0.0837787184 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
12 Hb_003893_090 0.0838304307 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_000503_050 0.0838869108 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
14 Hb_000086_570 0.0848680522 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
15 Hb_000522_080 0.0854057174 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
16 Hb_002963_010 0.0858365811 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
17 Hb_003020_230 0.086523968 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
18 Hb_007479_020 0.0871971694 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
19 Hb_008289_060 0.0878291313 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
20 Hb_003408_020 0.0881254716 - - hypothetical protein RCOM_0453040 [Ricinus communis]

Gene co-expression network

sample Hb_014720_080 Hb_014720_080 Hb_001722_100 Hb_001722_100 Hb_014720_080--Hb_001722_100 Hb_000025_120 Hb_000025_120 Hb_014720_080--Hb_000025_120 Hb_021650_030 Hb_021650_030 Hb_014720_080--Hb_021650_030 Hb_002540_030 Hb_002540_030 Hb_014720_080--Hb_002540_030 Hb_000146_020 Hb_000146_020 Hb_014720_080--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_014720_080--Hb_000834_270 Hb_001235_190 Hb_001235_190 Hb_001722_100--Hb_001235_190 Hb_002963_010 Hb_002963_010 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_001722_100--Hb_000834_270 Hb_008173_090 Hb_008173_090 Hb_001722_100--Hb_008173_090 Hb_000496_060 Hb_000496_060 Hb_000025_120--Hb_000496_060 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000025_120--Hb_000146_020 Hb_000025_120--Hb_000834_270 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_002411_200 Hb_002411_200 Hb_021650_030--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_000146_020--Hb_000347_410 Hb_000146_020--Hb_000834_270 Hb_003376_030 Hb_003376_030 Hb_000146_020--Hb_003376_030 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_002027_210 Hb_002027_210 Hb_000146_020--Hb_002027_210 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_002918_200 Hb_002918_200 Hb_000834_270--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
470.729 227.725 93.8513 170.988 302.924 392.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
928.951 789.873 623.88 291.379 114.934

CAGE analysis