Hb_001881_020

Information

Type -
Description -
Location Contig1881: 4335-18602
Sequence    

Annotation

kegg
ID rcu:RCOM_0866570
description clathrin binding protein, putative
nr
ID XP_002519892.1
description clathrin binding protein, putative [Ricinus communis]
swissprot
ID Q62421
description Endophilin-A3 OS=Mus musculus GN=Sh3gl3 PE=2 SV=1
trembl
ID B9S1M7
description Clathrin binding protein, putative OS=Ricinus communis GN=RCOM_0866570 PE=4 SV=1
Gene Ontology
ID GO:0005886
description sh3 domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18567: 4389-18613
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001881_020 0.0 - - clathrin binding protein, putative [Ricinus communis]
2 Hb_000671_150 0.0600758752 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
3 Hb_021650_030 0.0675860271 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
4 Hb_000091_090 0.0714522937 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_020178_070 0.0781994048 - - Protein Z, putative [Ricinus communis]
6 Hb_002411_200 0.0801292593 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_570 0.0816624548 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
8 Hb_001691_210 0.0840804639 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_000205_270 0.086318209 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
10 Hb_003020_230 0.0864163798 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
11 Hb_001718_100 0.0888425457 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_142898_010 0.0889677563 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000608_420 0.0902088202 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
14 Hb_000089_160 0.0913992936 - - 60S ribosomal protein L5B [Hevea brasiliensis]
15 Hb_014720_080 0.0917982527 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
16 Hb_155764_010 0.0920300454 - - -
17 Hb_002078_450 0.0931674528 - - nuclear transport factor, putative [Ricinus communis]
18 Hb_000009_160 0.0956012997 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
19 Hb_000030_100 0.0973612889 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
20 Hb_016065_010 0.0978891598 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]

Gene co-expression network

sample Hb_001881_020 Hb_001881_020 Hb_000671_150 Hb_000671_150 Hb_001881_020--Hb_000671_150 Hb_021650_030 Hb_021650_030 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_020178_070 Hb_020178_070 Hb_001881_020--Hb_020178_070 Hb_002411_200 Hb_002411_200 Hb_001881_020--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_001881_020--Hb_000086_570 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_000193_290 Hb_000193_290 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_021650_030--Hb_000091_090 Hb_021650_030--Hb_002411_200 Hb_021650_030--Hb_000086_570 Hb_002078_450 Hb_002078_450 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_003151_050 Hb_003151_050 Hb_000091_090--Hb_003151_050 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_002411_200 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_001248_130 Hb_001248_130 Hb_020178_070--Hb_001248_130 Hb_000567_260 Hb_000567_260 Hb_020178_070--Hb_000567_260 Hb_001671_020 Hb_001671_020 Hb_020178_070--Hb_001671_020 Hb_020178_070--Hb_021650_030 Hb_020178_070--Hb_002411_200 Hb_002411_200--Hb_000086_570 Hb_002411_200--Hb_014720_080 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0943 11.678 4.12653 8.01294 17.2215 31.5006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.3551 35.4527 39.0254 19.6763 4.98532

CAGE analysis