Hb_003018_190

Information

Type -
Description -
Location Contig3018: 91156-93033
Sequence    

Annotation

kegg
ID rcu:RCOM_0871180
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012065853.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
swissprot
ID O65543
description Pentatricopeptide repeat-containing protein At4g31070, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=3 SV=2
trembl
ID B9S6P4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0871180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_E14.ab1: 92301-93069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
2 Hb_131864_040 0.0647903829 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
3 Hb_000997_400 0.0670928283 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
4 Hb_002603_160 0.0689576594 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
5 Hb_001141_280 0.0730592759 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
6 Hb_005488_010 0.0758162195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006846_110 0.0759089762 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
8 Hb_000377_060 0.0778675087 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_016065_010 0.0787541523 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
10 Hb_000671_150 0.0791881379 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
11 Hb_000836_070 0.0805761687 - - protein binding protein, putative [Ricinus communis]
12 Hb_154648_010 0.0808440167 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
13 Hb_010710_040 0.0853819246 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_001158_140 0.0858308397 - - glutamate-1-semialdehyde 2,1-aminomutase, putative [Ricinus communis]
15 Hb_000223_150 0.086084972 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
16 Hb_008453_090 0.0864357347 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
17 Hb_006816_140 0.0878158063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
18 Hb_001109_020 0.0918104361 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000200_050 0.0919190399 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000205_270 0.092070994 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003018_190 Hb_003018_190 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_131864_040--Hb_002603_160 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_131864_040--Hb_006846_110 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_002603_160--Hb_006846_110 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_000223_150 Hb_000223_150 Hb_002603_160--Hb_000223_150 Hb_002603_160--Hb_001141_280 Hb_009666_040 Hb_009666_040 Hb_001141_280--Hb_009666_040 Hb_001829_060 Hb_001829_060 Hb_001141_280--Hb_001829_060 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_000239_010 Hb_000239_010 Hb_001141_280--Hb_000239_010 Hb_001109_020 Hb_001109_020 Hb_001141_280--Hb_001109_020 Hb_005488_010--Hb_016065_010 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33008 2.97391 1.23698 2.93169 5.34443 10.3323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93968 13.2368 17.4137 3.98054 2.49074

CAGE analysis