Hb_006846_110

Information

Type -
Description -
Location Contig6846: 92764-94359
Sequence    

Annotation

kegg
ID rcu:RCOM_1503120
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090553.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
swissprot
ID Q9FLS9
description Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
trembl
ID B9RA45
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1503120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54068: 93613-93997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
2 Hb_131864_040 0.0719859535 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
3 Hb_003018_190 0.0759089762 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
4 Hb_000223_150 0.0762630341 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
5 Hb_007747_200 0.0768155093 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
6 Hb_002603_160 0.0800071006 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
7 Hb_008453_090 0.0824822527 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
8 Hb_000671_150 0.0825878783 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
9 Hb_016065_010 0.0857871785 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
10 Hb_001184_110 0.0869449518 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
11 Hb_000457_150 0.0875097402 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
12 Hb_000935_050 0.0877782418 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
13 Hb_000019_130 0.088686392 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
14 Hb_010710_040 0.0902085285 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000635_220 0.0914214719 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
16 Hb_005532_060 0.0919557849 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
17 Hb_000193_290 0.0920791852 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
18 Hb_000997_400 0.0969016155 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
19 Hb_000200_340 0.0970674242 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
20 Hb_005488_010 0.0971646062 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006846_110 Hb_006846_110 Hb_131864_040 Hb_131864_040 Hb_006846_110--Hb_131864_040 Hb_003018_190 Hb_003018_190 Hb_006846_110--Hb_003018_190 Hb_000223_150 Hb_000223_150 Hb_006846_110--Hb_000223_150 Hb_007747_200 Hb_007747_200 Hb_006846_110--Hb_007747_200 Hb_002603_160 Hb_002603_160 Hb_006846_110--Hb_002603_160 Hb_008453_090 Hb_008453_090 Hb_006846_110--Hb_008453_090 Hb_131864_040--Hb_002603_160 Hb_131864_040--Hb_003018_190 Hb_016065_010 Hb_016065_010 Hb_131864_040--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_131864_040--Hb_005488_010 Hb_055062_030 Hb_055062_030 Hb_131864_040--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_000223_150--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_000223_150--Hb_008289_060 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_005532_060 Hb_005532_060 Hb_000223_150--Hb_005532_060 Hb_000223_150--Hb_131864_040 Hb_000019_130 Hb_000019_130 Hb_007747_200--Hb_000019_130 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_000002_050 Hb_000002_050 Hb_007747_200--Hb_000002_050 Hb_016901_010 Hb_016901_010 Hb_007747_200--Hb_016901_010 Hb_005188_090 Hb_005188_090 Hb_002603_160--Hb_005188_090 Hb_002603_160--Hb_000223_150 Hb_002603_160--Hb_001141_280 Hb_008453_090--Hb_004951_040 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_008453_090--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30302 2.016 0.641056 0.691692 2.73931 4.43383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1302 5.99546 8.14436 2.74713 1.19983

CAGE analysis