Hb_016065_010

Information

Type -
Description -
Location Contig16065: 9583-11196
Sequence    

Annotation

kegg
ID pmum:103328678
description pentatricopeptide repeat-containing protein At5g08305
nr
ID XP_012072852.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
swissprot
ID P0C8Q7
description Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
trembl
ID A0A067KR70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05952 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g08305

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016065_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
2 Hb_000205_270 0.0479562446 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
3 Hb_005488_010 0.0564696247 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008453_090 0.0596875895 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
5 Hb_055062_030 0.0604353693 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
6 Hb_009486_130 0.0645990052 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
7 Hb_000009_160 0.0662214183 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
8 Hb_131864_040 0.0673677523 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
9 Hb_000329_310 0.0695075379 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
10 Hb_001863_390 0.0720443946 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
11 Hb_001109_020 0.0734251387 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000200_050 0.0741120171 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_008289_060 0.0748805746 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_003018_200 0.0755871753 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
15 Hb_000239_010 0.0769363462 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_003018_190 0.0787541523 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
17 Hb_000671_150 0.0792390909 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_000115_330 0.0795766938 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
19 Hb_007943_090 0.0801887912 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_000193_290 0.0831142087 - - hypothetical protein JCGZ_11661 [Jatropha curcas]

Gene co-expression network

sample Hb_016065_010 Hb_016065_010 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_055062_030 Hb_055062_030 Hb_016065_010--Hb_055062_030 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_055062_030 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_008453_090--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_000115_330 Hb_000115_330 Hb_009486_130--Hb_000115_330 Hb_000431_010 Hb_000431_010 Hb_009486_130--Hb_000431_010 Hb_008300_010 Hb_008300_010 Hb_009486_130--Hb_008300_010 Hb_009486_130--Hb_000205_270 Hb_009486_130--Hb_005488_010 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_005431_010 Hb_005431_010 Hb_000009_160--Hb_005431_010 Hb_000009_160--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6566 0.879332 0.529715 0.718943 1.94848 2.42059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41218 3.63745 3.5326 1.19827 0.711062

CAGE analysis