Hb_004951_040

Information

Type -
Description -
Location Contig4951: 37051-38325
Sequence    

Annotation

kegg
ID rcu:RCOM_0867900
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012072643.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
swissprot
ID Q9C6R9
description Pentatricopeptide repeat-containing protein At1g31790 OS=Arabidopsis thaliana GN=PCMP-A1 PE=2 SV=1
trembl
ID A0A067KZY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06707 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45435: 35646-37236 , PASA_asmbl_45436: 37920-38105
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004951_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
2 Hb_008453_090 0.0562711306 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
3 Hb_008289_060 0.0565097096 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
4 Hb_055062_030 0.0760669133 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
5 Hb_003018_200 0.0780096962 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
6 Hb_000223_150 0.078613084 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
7 Hb_005333_130 0.0843652778 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001587_020 0.0853535981 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
9 Hb_005532_060 0.0870916016 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
10 Hb_007943_090 0.0893818509 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
11 Hb_005488_010 0.0898138284 - - conserved hypothetical protein [Ricinus communis]
12 Hb_016065_010 0.0902639395 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
13 Hb_178968_110 0.0905143138 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
14 Hb_023386_080 0.0913012177 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
15 Hb_003151_050 0.0913399834 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
16 Hb_007101_130 0.091631631 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000030_100 0.0934746006 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
18 Hb_000193_290 0.0950342306 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
19 Hb_004324_370 0.0953803503 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
20 Hb_001863_390 0.0961227541 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]

Gene co-expression network

sample Hb_004951_040 Hb_004951_040 Hb_008453_090 Hb_008453_090 Hb_004951_040--Hb_008453_090 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_055062_030 Hb_055062_030 Hb_004951_040--Hb_055062_030 Hb_003018_200 Hb_003018_200 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_005333_130 Hb_005333_130 Hb_004951_040--Hb_005333_130 Hb_016065_010 Hb_016065_010 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_008453_090--Hb_055062_030 Hb_008453_090--Hb_003018_200 Hb_008453_090--Hb_005333_130 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_007101_150 Hb_007101_150 Hb_003018_200--Hb_007101_150 Hb_000056_340 Hb_000056_340 Hb_003018_200--Hb_000056_340 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130 Hb_000223_150--Hb_005488_010 Hb_000223_150--Hb_008289_060 Hb_006846_110 Hb_006846_110 Hb_000223_150--Hb_006846_110 Hb_005532_060 Hb_005532_060 Hb_000223_150--Hb_005532_060 Hb_131864_040 Hb_131864_040 Hb_000223_150--Hb_131864_040 Hb_005333_130--Hb_003018_200 Hb_000634_100 Hb_000634_100 Hb_005333_130--Hb_000634_100 Hb_023386_080 Hb_023386_080 Hb_005333_130--Hb_023386_080 Hb_003216_100 Hb_003216_100 Hb_005333_130--Hb_003216_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41785 3.2923 1.6106 1.12418 5.65068 5.82712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60645 12.917 12.3551 2.82799 2.03458

CAGE analysis