Hb_002603_100

Information

Type -
Description -
Location Contig2603: 59208-70418
Sequence    

Annotation

kegg
ID rcu:RCOM_0339590
description ATATH9, putative
nr
ID XP_002533645.1
description ATATH9, putative [Ricinus communis]
swissprot
ID O04212
description Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana GN=At2g40090 PE=2 SV=2
trembl
ID B9T5X6
description ATATH9, putative OS=Ricinus communis GN=RCOM_0339590 PE=4 SV=1
Gene Ontology
ID GO:0004672
description abc1 protein at2g40090

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27137: 59205-60982 , PASA_asmbl_27138: 66768-69483 , PASA_asmbl_27139: 69509-70300 , PASA_asmbl_27140: 70116-70309
cDNA
(Sanger)
(ID:Location)		 013_M09.ab1: 59298-60982

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_100 0.0 - - ATATH9, putative [Ricinus communis]
2 Hb_023386_080 0.0550689564 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
3 Hb_000376_050 0.0597095629 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_022250_040 0.060929931 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
5 Hb_000956_010 0.0626038064 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
6 Hb_001243_050 0.0646892482 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
7 Hb_001671_020 0.0657668645 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
8 Hb_003018_200 0.0668628678 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_000221_220 0.0684986554 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_125000_010 0.0700043339 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
11 Hb_003540_040 0.0731233999 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
12 Hb_007426_230 0.0742542497 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
13 Hb_000975_290 0.076329325 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_009711_030 0.0763960889 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
15 Hb_021650_030 0.0766396302 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
16 Hb_000703_140 0.0768530047 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
17 Hb_002097_110 0.0773770685 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_021068_050 0.0777489755 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
19 Hb_004195_160 0.0788987735 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
20 Hb_000329_040 0.0800562317 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_100 Hb_002603_100 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_000376_050 Hb_000376_050 Hb_002603_100--Hb_000376_050 Hb_022250_040 Hb_022250_040 Hb_002603_100--Hb_022250_040 Hb_000956_010 Hb_000956_010 Hb_002603_100--Hb_000956_010 Hb_001243_050 Hb_001243_050 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_000329_040 Hb_000329_040 Hb_023386_080--Hb_000329_040 Hb_000634_100 Hb_000634_100 Hb_023386_080--Hb_000634_100 Hb_044662_070 Hb_044662_070 Hb_023386_080--Hb_044662_070 Hb_023386_080--Hb_000956_010 Hb_023386_080--Hb_000376_050 Hb_000376_050--Hb_000956_010 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_009711_030 Hb_009711_030 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_000956_010--Hb_001427_120 Hb_006693_030 Hb_006693_030 Hb_000956_010--Hb_006693_030 Hb_000956_010--Hb_022250_040 Hb_006447_010 Hb_006447_010 Hb_001243_050--Hb_006447_010 Hb_001243_050--Hb_001671_020 Hb_001243_050--Hb_022250_040 Hb_002307_030 Hb_002307_030 Hb_001243_050--Hb_002307_030 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8943 6.40938 5.83006 5.04956 18.2627 19.2413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8994 24.1883 21.5963 5.93099 2.95354

CAGE analysis